I think that the gnucash register is a custom widget developed by the
gnucash people. At least that's what's hinted in this thread about this
very problem on the gnucash-user mailing list:

http://lists.gnucash.org/pipermail/gnucash-user/2007-October/022098.html

Could that be a source of the problem?

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Incorrect rendering of account tabs under XGL and Compiz
https://bugs.launchpad.net/bugs/129867
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