Hello Lukasz,

I could successfully verify this SRU inside a Focal LXD container for 
command-not-found 20.04.4:
root@f:~# dpkg -l | grep command-not-found
ii  command-not-found             20.04.4                            all        
  Suggest installation of packages in interactive bash sessions
ii  python3-commandnotfound       20.04.4                            all        
  Python 3 bindings for command-not-found.


root@f:~# apt update
...
root@f:~# cp /var/lib/command-not-found/commands.db 
/var/lib/command-not-found/commands.db.tmp
root@f:~# ll /var/lib/command-not-found/
total 6064
drwxr-xr-x  2 root root    4096 Aug 27 07:11 ./
drwxr-xr-x 24 root root    4096 Aug 27 07:08 ../
-rw-r--r--  1 root root 3096576 Aug 27 07:11 commands.db
-rw-r--r--  1 root root    3634 Aug 27 07:11 commands.db.metadata
-rw-r--r--  1 root root 3096576 Aug 27 07:11 commands.db.tmp
root@f:~# sqlite3 /var/lib/command-not-found/commands.db.tmp
SQLite version 3.31.1 2020-01-27 19:55:54
Enter ".help" for usage hints.
sqlite> PRAGMA locking_mode = EXCLUSIVE;
exclusive
sqlite> BEGIN EXCLUSIVE;
sqlite> 


root@f:~# rm /var/lib/command-not-found/commands.db.metadata
root@f:~# /usr/lib/cnf-update-db --verbose
WARNING:root:/var/lib/command-not-found/commands.db.tmp is locked by another 
process. Ignoring.
root@f:~# echo $?
0

After the database is unlocked, the application runs as expected:
root@f:~# /usr/lib/cnf-update-db --verbose
INFO:root:processed 14855 packages in 1.45s

** Tags removed: verification-needed-focal
** Tags added: verification-done-focal

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https://bugs.launchpad.net/bugs/1875760

Title:
  /usr/lib/cnf-update-db:sqlite3.OperationalError:/usr/lib/cnf-update-
  db@26:create

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