Found something else that affects this. The Gnome mouse control has a
touchpad tab, with checkboxes for enable vertical scroll and enable
horizontal scroll. Apparently the default is to enable vertical but not
horizontal scrolling, and it would appear that this is turning off the
scrolling. Checked the box, and it seems to work fine now.

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synaptics driver disregards some xorg.conf settings
https://bugs.launchpad.net/bugs/160624
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