I have the impression, that this problem is somehow related to sudos or
gksus ability to resolve its own hostname. This Bug appeared for me
after a fresh hardy install. I discovered that my Notebook was not able
to resolve it's own hostname (somehow /etc/hosts got messed up) after
fixing that gksu worked flawlessly again.

cheers, 
  --Florian

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update-manager fails to bring up the password prompt for root privileges
https://bugs.launchpad.net/bugs/187982
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