Seems to me that it's akonadi that is failing to shut mysqld down
properly when it is running 5.5 that is causing the issue - possibly
with lack of database migration to 5.6?

There's a separate crash bug in mysqld that should be fixed (it
shouldn't segfault no matter what really), but I'll add a task back for
akonadi as it is the akonadi package that needs to keep affairs in
~/.local/share/akonadi/ in order.

** Also affects: akonadi (Ubuntu)
   Importance: Undecided
       Status: New

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https://bugs.launchpad.net/bugs/1437846

Title:
  akonadi mysql 5.6 crash with signal 11

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