I ran

xmodmap -pke > ~/. Xmodmap

In a terminal.
My keys are still working after several reboots.

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which is subscribed to libxkbcommon in Ubuntu.
https://bugs.launchpad.net/bugs/1224732

Title:
  Custom keyboard shortcuts don't work

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https://bugs.launchpad.net/gnome-control-center/+bug/1224732/+subscriptions

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