Hi all:
    I have had several problems building Urjtag for windows under 
Cygwin. Check this link please:
https://sourceforge.net/projects/urjtag/forums/forum/682993/topic/3458301

Most of them are related to missing packages, so skip the first posts if 
you want.

The main open issues are:
* the git clone command doesn't work (at least for me). SVN works fine. 
I have a fresh Cygwin install.
* the link order is not fine when I use the libftd2xx, so I had to make 
the link command manually.
* the executable created fail to start. This is the output:

/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
UrJTAG 0.10 #
Copyright (C) 2002, 2003 ETC s.r.o.
Copyright (C) 2007, 2008, 2009 Kolja Waschk and the respective authors

UrJTAG is free software, covered by the GNU General Public License, and 
you are
welcome to change it and/or distribute copies of it under certain 
conditions.
There is absolutely no warranty for UrJTAG.

jtag.c:537 main() Warning: UrJTAG may damage your hardware!
Type "quit" to exit, "help" for help.

jtag.c:545 main() Warning: jtag.c:72 jtag_create_jtagdir() unsupported: 
env var
HOME not set
Error: jtag.c:317 jtag_parse_rc() unsupported: env var HOME not set
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////

This problem is caused by the fact that Urjtag seems to look for the 
environment variable HOME, but in my Win XP the variables are
HOMEDRIVE=C:
HOMEPATH=\Documents and Settings\gaston

I hope it helps.
Regards,
Gastón.

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