This works great: https://github.com/dkpro/dkpro-cassis
You'll initially need to create a modified TypeSystem.xmi file, but after that you should be good to go. Greg-- On Mon, Dec 13, 2021 at 12:35 PM Daniel Knox <[email protected]> wrote: > Sorry for the newbie followup question. I have been able to get the > default clinical pipeline to run, and to play with html writer (add > pretty.html.HtmlTextWriter) and property text writer. Does anyone have a > way to parse the output files into csv or other format that I can then feed > to a larger database program? > > > > I have tried both of these but I am still having issues since both seem to > be breaking for me. > > https://github.com/JuliaHealth/CTakesParser.jl > > https://pypi.org/project/ctakes-parser/ > > > > Thank you to anyone who can help. I am happy to add someone to the > authors list of the paper that this is generating if you want to help me > through this processing. > > > > Daniel Knox > > > NOTICE: This e-mail is for the sole use of the intended recipient and may > contain confidential and privileged information. If you are not the > intended recipient, you are prohibited from reviewing, using, disclosing or > distributing this e-mail or its contents. If you have received this e-mail > in error, please contact the sender by reply e-mail and destroy all copies > of this e-mail and its contents. > -- Greg M. Silverman Senior Systems Developer NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group> Department of Surgery University of Minnesota [email protected]
