Greg, I’m curious why you said that you needed to create a modified type system file? I’m using the same type system file that comes with cTAKES and haven’t run into any issues.
Best, Dima From: Greg Silverman <[email protected]> Date: Thursday, December 16, 2021 at 09:49 To: [email protected] <[email protected]> Subject: Re: XMI ouput This works great: https://github.com/dkpro/dkpro-cassis You'll initially need to create a modified TypeSystem.xmi file, but after that you should be good to go. Greg-- On Mon, Dec 13, 2021 at 12:35 PM Daniel Knox <[email protected]<mailto:[email protected]>> wrote: Sorry for the newbie followup question. I have been able to get the default clinical pipeline to run, and to play with html writer (add pretty.html.HtmlTextWriter) and property text writer. Does anyone have a way to parse the output files into csv or other format that I can then feed to a larger database program? I have tried both of these but I am still having issues since both seem to be breaking for me. https://github.com/JuliaHealth/CTakesParser.jl https://pypi.org/project/ctakes-parser/ Thank you to anyone who can help. I am happy to add someone to the authors list of the paper that this is generating if you want to help me through this processing. Daniel Knox NOTICE: This e-mail is for the sole use of the intended recipient and may contain confidential and privileged information. If you are not the intended recipient, you are prohibited from reviewing, using, disclosing or distributing this e-mail or its contents. If you have received this e-mail in error, please contact the sender by reply e-mail and destroy all copies of this e-mail and its contents. -- Greg M. Silverman Senior Systems Developer NLP/IE<https://healthinformatics.umn.edu/research/nlpie-group> Department of Surgery University of Minnesota [email protected]<mailto:[email protected]>
