btw, those diffs look ugly, I wanted to mention that in eclipse in team->History you can ignore whitespace and see the differences in a better way, rather than one big red chunk of removed data then one big green chunk of added data, just because the indentation was also changed I did disable auto formatting on save now, future edits should be less painful to diff
On Sun, Jul 31, 2011 at 12:26 AM, Niels Hoogeveen <pd_aficion...@hotmail.com > wrote: > > It looks as if you have modified the file header of the source files. > Maven checks the license (the file header) and returns an error message > when the license required is different from the license provided. > When looking at the diff of one of your edits I noticed there are extra > spaces in the license. See: > https://github.com/13th-floor/bdb-index/commit/7c6b59fbdc445a122aa247b391c15a23dd64cac9#src/main/java/org/neo4j/index/bdbje/BerkeleyDbBatchInserterIndexProvider.java > These extra spaces make that maven does not install. > Niels > > > Date: Sun, 31 Jul 2011 00:00:42 +0200 > > From: cyuczie...@gmail.com > > To: user@lists.neo4j.org > > Subject: Re: [Neo4j] bdb-index > > > > related to this I've created: https://trac.neo4j.org/ticket/358 > > also committed on my fork, now AllTests.java works > > https://github.com/13th-floor/bdb-index > > > > for some reason I cannot mvn install: > > [INFO] [enforcer:enforce {execution: enforce-maven}] > > [INFO] [license:check {execution: check-licenses}] > > [INFO] Checking licenses... > > [INFO] Missing header in: > > e:\down\13th-floor-bdb-index-f9a3155\src\main\java\org > > \neo4j\index\bdbje\BerkeleyDbIndex.java > > [INFO] Missing header in: > > e:\down\13th-floor-bdb-index-f9a3155\src\main\java\org > > \neo4j\index\bdbje\BerkeleyDbBatchInserterIndexProvider.java > > [INFO] Missing header in: > > e:\down\13th-floor-bdb-index-f9a3155\src\test\java\org > > \neo4j\index\bdbje\Neo4jTestCase.java > > [INFO] Missing header in: > > e:\down\13th-floor-bdb-index-f9a3155\src\test\java\org > > \neo4j\index\bdbje\TestBerkeley.java > > [INFO] Missing header in: > > e:\down\13th-floor-bdb-index-f9a3155\src\main\java\org > > \neo4j\index\bdbje\BerkeleyDbBatchInserterIndex.java > > [INFO] Missing header in: > > e:\down\13th-floor-bdb-index-f9a3155\src\main\java\org > > \neo4j\index\bdbje\BerkeleyDbDataSource.java > > [INFO] Missing header in: > > e:\down\13th-floor-bdb-index-f9a3155\src\test\java\org > > \neo4j\index\bdbje\TestBerkeleyBatchInsert.java > > [INFO] Missing header in: > > e:\down\13th-floor-bdb-index-f9a3155\src\test\java\All > > Tests.java > > [ERROR] BUILD ERROR > > [INFO] --------------------------------------------------------- > > [INFO] Some files do not have the expected license header > > [INFO] --------------------------------------------------------- > > > > But it should work, I say; maybe let me know if it doesn't > > > > On Sat, Jul 30, 2011 at 11:41 PM, John cyuczieekc <cyuczie...@gmail.com > >wrote: > > > > > org.neo4j.kernel.impl.batchinsert.BatchInserterImpl > > > keeps StringLogger msgLog still open even after shutdown() > > > public void shutdown() > > > { > > > graphDbService.clearCaches(); > > > neoStore.close(); > > > msgLog.logMessage( Thread.currentThread() + " Clean shutdown on > > > BatchInserter(" + this + ")", true ); > > > } > > > we'd need a msgLog.close(storeDir) > > > and storeDir is the same param given to the constructor of > > > BatchInserterImpl > > > maybe someone from neo4j could do that? > > > > > > meanwhile I will ignore the failure to delete that file > > > > > > > > > On Sat, Jul 30, 2011 at 11:34 PM, John cyuczieekc < > cyuczie...@gmail.com>wrote: > > > > > >> testFindCreatedIndex() is the method that fails (due to unable to > delete > > >> the file, else it works fine) > > >> but it only fails when testInsertionSpeed() is allowed to execute (ie. > not > > >> @Ignore) > > >> > > >> messages.log contents: > > >> Sat Jul 30 23:31:23 CEST 2011: Thread[main,5,main] Starting > > >> BatchInserter(EmbeddedBatchInserter[target/var/batch]) > > >> Sat Jul 30 23:31:42 CEST 2011: Thread[main,5,main] Clean shutdown on > > >> BatchInserter(EmbeddedBatchInserter[target/var/batch]) > > >> > > >> > > >> > > >> On Sat, Jul 30, 2011 at 11:26 PM, John cyuczieekc < > cyuczie...@gmail.com>wrote: > > >> > > >>> > > >>> > > >>> On Sat, Jul 30, 2011 at 11:23 PM, John cyuczieekc < > cyuczie...@gmail.com>wrote: > > >>> > > >>>> I did a quick check of what you said > > >>>> org.neo4j.index.bdbje.BerkeleyDbCommand.writeToFile(LogBuffer) > > >>>> char[] indexName = indexId.indexName.toCharArray(); > > >>>> buffer.putInt( indexName.length ); > > >>>> buffer.put( indexName ); > > >>>> > > >>>> I'm probably missing something but on my side it looks like it > writes > > >>>> length then indexName (and I didn't update from github, just in case > you've > > >>>> already fixed this) > > >>>> > > >>>> Either way, my impression of what was happening is that some files > got > > >>>> deleted, except some ie. the log, which were still open/in use, and > maybe > > >>>> when recovery was tried, either it couldn't be opened, or due to > being > > >>>> opened contained impartial data, or all was well but recovery > couldn't > > >>>> happen because the log needed some other files or a previous > database > > >>>> snapshot upon which to apply the recovered transactions > > >>>> > > >>>> I only get that messages.log being unable to delete when I allow the > > >>>> test testFindCreatedIndex() to run, I cannot yet figure out who > creates that > > >>>> file and to make sure it's being closed > > >>>> > > >>>> correction testInsertionSpeed() > > >>> > > >>>> John. > > >>>> > > >>>> > > >>>> On Sat, Jul 30, 2011 at 11:09 PM, Niels Hoogeveen < > > >>>> pd_aficion...@hotmail.com> wrote: > > >>>> > > >>>>> > > >>>>> The problem is indeed related to not properly closing the bdb > database, > > >>>>> and that is triggers another problem. In BerkeleyDbCommand data is > being > > >>>>> stored into the transaction log and been read from the transaction > log later > > >>>>> on. Something goes wrong making the indexName being retrieved from > the > > >>>>> transaction log look like garbage. > > >>>>> I think I have located the problem. In the method > > >>>>> BerkeleyDbCommand#writeToFile the sequence of elements written to > the buffer > > >>>>> is different from the order in which the method > > >>>>> BerkeleyDbCommand#readCommand reads those elements. The > > >>>>> BerkeleyDbCommand#writeToFile method cannot be correct, because it > first > > >>>>> writes the indexName and then its length. It should of course first > write > > >>>>> the length and then the indexName. > > >>>>> Niels > > >>>>> > Date: Sat, 30 Jul 2011 22:51:40 +0200 > > >>>>> > From: cyuczie...@gmail.com > > >>>>> > To: user@lists.neo4j.org > > >>>>> > Subject: Re: [Neo4j] bdb-index > > >>>>> > > > >>>>> > found out that I don't need to call index.delete() all the time, > > >>>>> instead > > >>>>> > BerkeleyDbDataSource.close() aka XaDataSource.close() should do > what > > >>>>> > index.delete() does, namely closing all databases (related to > this > > >>>>> > datasource) and their bdb environment; so I do just that. > > >>>>> > > > >>>>> > Therefore I answer some parts I asked before. > > >>>>> > > > >>>>> > And that logical.log.1 seems to be a part of XA Transactions and > I > > >>>>> must find > > >>>>> > a way to see that it's closed or something > > >>>>> > > > >>>>> > On Sat, Jul 30, 2011 at 10:15 PM, John cyuczieekc < > > >>>>> cyuczie...@gmail.com>wrote: > > >>>>> > > > >>>>> > > in TestBerkeley.java > > >>>>> > > So far I've found that, bdb environment(and relevant databases) > > >>>>> is(are) > > >>>>> > > only closed when index.delete() is called > > >>>>> > > and that can only be called when the current transaction is > > >>>>> finished (else > > >>>>> > > it will complain that some bdb databases are not opened on txn > > >>>>> commit) > > >>>>> > > Applying all those changes, the following file is still in > use > > >>>>> (due to > > >>>>> > > cannot be deleted): > > >>>>> > > > > >>>>> > > E:\wrkspc\bdb-index-fork\target\var\neo4j-db\logical.log.1 > > >>>>> > > This seems to be part of neo4j, though I am not sure why would > it > > >>>>> still be > > >>>>> > > in use even after graphDb.shutdown() > > >>>>> > > Any ideas why that would be still in use? Is graphDb.shutdown() > > >>>>> blocking > > >>>>> > > until everything is closed? or are there still threads left > keeping > > >>>>> files > > >>>>> > > locked? or shutdown is delegated to other threads which may > still > > >>>>> be doing > > >>>>> > > their work when .shutdown() returns ? > > >>>>> > > > > >>>>> > > By looking at some testcases in neo4j, I see that > *index.delete() > > >>>>> can be > > >>>>> > > called before transaction finished, is this correct* ? anyone? > > >>>>> > > ie. > > >>>>> > > beginTx(); > > >>>>> > > index = graphDb.index().forNodes( INDEX_NAME ); > > >>>>> > > index.delete(); > > >>>>> > > restartTx(); > > >>>>> > > where > > >>>>> > > void restartTx() > > >>>>> > > { > > >>>>> > > finishTx( true ); > > >>>>> > > beginTx(); > > >>>>> > > } > > >>>>> > > > > >>>>> > > in this case, if that's true that index.delete() should not > cause > > >>>>> the txn > > >>>>> > > commit to fail, then this needs to be fixed in bdb-index > > >>>>> > > > > >>>>> > > Also,* is neo4j closing the indexes* somehow when > > >>>>> graphDb.shutdown() ? it > > >>>>> > > seems to me the only close would be index.delete() and neo4j > isn't > > >>>>> closing > > >>>>> > > them, thus leaving the bdb Environment still open, thus tests > that > > >>>>> require > > >>>>> > > shutdown and reopen of graphdb will fail since bdb wasn't > itself > > >>>>> shutdown > > >>>>> > > and reopened but was left still open. > > >>>>> > > Maybe closing the indexes is left to the user then? it's fine > with > > >>>>> me, just > > >>>>> > > so long as I know > > >>>>> > > > > >>>>> > > > > >>>>> > > disorganized John :) > > >>>>> > > > > >>>>> > > > > >>>>> > > On Sat, Jul 30, 2011 at 9:06 PM, John cyuczieekc < > > >>>>> cyuczie...@gmail.com>wrote: > > >>>>> > > > > >>>>> > >> looks like before delving too deep, I found that attempting to > > >>>>> deleting > > >>>>> > >> the dbPath ie. deleteFileOrDirectory( dbPath ); > > >>>>> > >> fails, right after graphDB.shutdown(); - I'm excluding the > > >>>>> possibility > > >>>>> > >> that that method is deferring the shutdown to another thread > and > > >>>>> thus is > > >>>>> > >> non-blocking (due to my timing of it from previous tests looks > > >>>>> like it takes > > >>>>> > >> at most 3 sec) > > >>>>> > >> > > >>>>> > >> ie. this file cannot be deleted (likely's already in use): > > >>>>> > >> > > >>>>> > E:\wrkspc\bdb-index-fork\target\var\neo4j-db\index\bdb\Node\fast\name\je.info.0 > > >>>>> > >> I need to check if and how bdb gets shutdown also, it kind of > > >>>>> looks like > > >>>>> > >> it doesn't > > >>>>> > >> So since that file doesn't get deleted, but probably others > do, > > >>>>> maybe that > > >>>>> > >> is why we get those weird errors: > > >>>>> > >> > > >>>>> > >> Jul 30, 2011 9:04:11 PM > > >>>>> > >> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog > > >>>>> > >> doInternalRecovery > > >>>>> > >> INFO: Non clean shutdown detected on log > > >>>>> > >> [E:\wrkspc\bdb-index-fork\target\var\neo4j-db/logical.log.1]. > > >>>>> Recovery > > >>>>> > >> started ... > > >>>>> > >> java.lang.RuntimeException: > > >>>>> com.sleepycat.je.EnvironmentFailureException: > > >>>>> > >> (JE 4.1.10) Problem creating output files in: > > >>>>> > >> E:\wrkspc\bdb-index-fork\target\var\neo4j-db\index\bdb\Node\ > > >>>>> \name/ > > >>>>> > >> je.info UNEXPECTED_EXCEPTION: Unexpected internal Exception, > may > > >>>>> have > > >>>>> > >> side effects. > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.index.bdbje.BerkeleyDbDataSource.createDB(BerkeleyDbDataSource.java:377) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.index.bdbje.BerkeleyDbDataSource.getDatabase(BerkeleyDbDataSource.java:278) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.index.bdbje.BerkeleydbTransaction.doCommit(BerkeleyDbTransaction.java:191) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:319) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.injectOnePhaseCommit(XaResourceManager.java:366) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyOnePhaseCommitEntry(XaLogicalLog.java:514) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyEntry(XaLogicalLog.java:445) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.doInternalRecovery(XaLogicalLog.java:768) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:253) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:134) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.impl.transaction.xaframework.XaContainer.openLogicalLog(XaContainer.java:97) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.index.bdbje.BerkeleyDbDataSource.<init>(BerkeleyDbDataSource.java:96) > > >>>>> > >> at > > >>>>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native > > >>>>> > >> Method) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) > > >>>>> > >> at > > >>>>> java.lang.reflect.Constructor.newInstance(Constructor.java:525) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.impl.transaction.XaDataSourceManager.create(XaDataSourceManager.java:76) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java:175) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.index.bdbje.BerkeleyDbIndexImplementation.<init>(BerkeleyDbIndexImplementation.java:67) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.index.bdbje.BerkeleyDbIndexImplementation.<init>(BerkeleyDbIndexImplementation.java:58) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.index.bdbje.BerkeleyDbIndexProvider.load(BerkeleyDbIndexProvider.java:38) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.KernelData.loadIndexImplementations(KernelData.java:146) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.EmbeddedGraphDbImpl$2.initializeIndexProviders(EmbeddedGraphDbImpl.java:179) > > >>>>> > >> at > > >>>>> org.neo4j.kernel.GraphDbInstance.start(GraphDbInstance.java:159) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.EmbeddedGraphDbImpl.<init>(EmbeddedGraphDbImpl.java:189) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:86) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:63) > > >>>>> > >> at > > >>>>> org.neo4j.index.bdbje.Neo4jTestCase.setUpDb(Neo4jTestCase.java:54) > > >>>>> > >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native > Method) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > > >>>>> > >> at java.lang.reflect.Method.invoke(Method.java:601) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:27) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:31) > > >>>>> > >> at > org.junit.runners.ParentRunner.run(ParentRunner.java:236) > > >>>>> > >> at org.junit.runners.Suite.runChild(Suite.java:128) > > >>>>> > >> at org.junit.runners.Suite.runChild(Suite.java:24) > > >>>>> > >> at > org.junit.runners.ParentRunner$3.run(ParentRunner.java:193) > > >>>>> > >> at > > >>>>> org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52) > > >>>>> > >> at > > >>>>> org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191) > > >>>>> > >> at > > >>>>> org.junit.runners.ParentRunner.access$000(ParentRunner.java:42) > > >>>>> > >> at > > >>>>> org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184) > > >>>>> > >> at > org.junit.runners.ParentRunner.run(ParentRunner.java:236) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) > > >>>>> > >> at > > >>>>> > >> > > >>>>> > org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197) > > >>>>> > >> Caused by: com.sleepycat.je.EnvironmentFailureException: (JE > > >>>>> 4.1.10) > > >>>>> > >> Problem creating output files in: > > >>>>> > >> E:\wrkspc\bdb-index-fork\target\var\neo4j-db\index\bdb\Node\ > > >>>>> > >> > > >>>>> > >> > > >>>>> > >> On Sat, Jul 30, 2011 at 8:22 PM, John cyuczieekc < > > >>>>> cyuczie...@gmail.com>wrote: > > >>>>> > >> > > >>>>> > >>> from my experience this kind of behaviour would happen mostly > due > > >>>>> to > > >>>>> > >>> using some static fields which are expected to be in > initialized > > >>>>> state for > > >>>>> > >>> each test, or test class > > >>>>> > >>> > > >>>>> > >>> I also needed to mention that I get this error: > > >>>>> > >>> Jul 30, 2011 8:18:54 PM > > >>>>> > >>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog > > >>>>> > >>> doInternalRecovery > > >>>>> > >>> INFO: Non clean shutdown detected on log > > >>>>> > >>> [E:\wrkspc\bdb-index-fork\target\var\batch/logical.log.1]. > > >>>>> Recovery started > > >>>>> > >>> ... > > >>>>> > >>> when running TestBerkeleyBatchInsert.java (all 3 tests in it) > but > > >>>>> not > > >>>>> > >>> when running only the test in which it appears namely the > method > > >>>>> > >>> testFindCreatedIndex() > > >>>>> > >>> > > >>>>> > >>> some state is carried from the previous tests, even if this > is > > >>>>> just the > > >>>>> > >>> database not being deleted > > >>>>> > >>> > > >>>>> > >>> I'll check some more, ofc > > >>>>> > >>> > > >>>>> > >>> > > >>>>> > >>> On Sat, Jul 30, 2011 at 7:57 PM, John cyuczieekc < > > >>>>> cyuczie...@gmail.com>wrote: > > >>>>> > >>> > > >>>>> > >>>> (ignore these, skip to the bold part: ie. search BOLD) > > >>>>> > >>>> Thanks Niels, I just tried what you said, with maven 3.0.3 > it > > >>>>> seemed to > > >>>>> > >>>> do some downloading work for a while then eventually got > this: > > >>>>> > >>>> [ERROR] Failed to execute goal on project > > >>>>> neo4j-berkeleydb-je-index: > > >>>>> > >>>> Could not resolve dependencies for project > > >>>>> > >>>> org.neo4j:neo4j-berkeleydb-je-index:jar:0.1-SNAPSHOT: Could > not > > >>>>> find > > >>>>> > >>>> artifact org.neo4j:neo4j-kernel:jar:1.3-SNAPSHOT in > > >>>>> oracleReleases ( > > >>>>> > >>>> http://download.oracle.com/maven) -> [Help 1] > > >>>>> > >>>> I'll try to view/edit that pom maybe I need 1.4 > > >>>>> > >>>> That seems to have worked, but now I get this: > > >>>>> > >>>> [INFO] Checking licenses... > > >>>>> > >>>> [INFO] Missing header in: > > >>>>> > >>>> e:\down\13th-floor-bdb-index-fb11e38\13th-floor-bdb-in > > >>>>> > >>>> > dex-fb11e38\src\test\java\org\neo4j\index\bdbje\RawBDBSpeed.java > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [INFO] BUILD FAILURE > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [INFO] Total time: 1:10.949s > > >>>>> > >>>> [INFO] Finished at: Sat Jul 30 19:11:16 CEST 2011 > > >>>>> > >>>> [INFO] Final Memory: 10M/156M > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [ERROR] Failed to execute goal > > >>>>> > >>>> com.mycila.maven-license-plugin:maven-license-plu > > >>>>> > >>>> gin:1.9.0:check (check-licenses) on project > > >>>>> neo4j-berkeleydb-je-index: > > >>>>> > >>>> Some file > > >>>>> > >>>> s do not have the expected license header -> [Help 1] > > >>>>> > >>>> > > >>>>> > >>>> How were you able to run mvn install ? did you have a > different > > >>>>> config > > >>>>> > >>>> ie. auto ignore licenses? what about the 1.3 to 1.4 > > >>>>> transformation, did you > > >>>>> > >>>> have to manually do it? So far, using maven is more of a > pain > > >>>>> than using > > >>>>> > >>>> simply eclipse and adding dependencies manually heh > > >>>>> > >>>> > > >>>>> > >>>> Maybe I should try maven 2, let's see... > > >>>>> > >>>> mvn -version > > >>>>> > >>>> Apache Maven 2.2.1 (r801777; 2009-08-06 21:16:01+0200) > > >>>>> > >>>> Java version: 1.6.0_26 > > >>>>> > >>>> Java home: C:\Program Files\Java\jdk1.6.0_26\jre > > >>>>> > >>>> Default locale: en_US, platform encoding: Cp1252 > > >>>>> > >>>> OS name: "windows 7" version: "6.1" arch: "amd64" Family: > > >>>>> "windows" > > >>>>> > >>>> > > >>>>> > >>>> With original pom with 1.3 neo4j requirement I still got > error, > > >>>>> changed > > >>>>> > >>>> to 1.4 > > >>>>> > >>>> then works but I get the licenses issue again: > > >>>>> > >>>> [INFO] [enforcer:enforce {execution: enforce-maven}] > > >>>>> > >>>> [INFO] [license:check {execution: check-licenses}] > > >>>>> > >>>> [INFO] Checking licenses... > > >>>>> > >>>> [INFO] Missing header in: > > >>>>> > >>>> e:\down\13th-floor-bdb-index-fb11e38\13th-floor-bdb-in > > >>>>> > >>>> > dex-fb11e38\src\test\java\org\neo4j\index\bdbje\RawBDBSpeed.java > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [ERROR] BUILD ERROR > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [INFO] Some files do not have the expected license header > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [INFO] For more information, run Maven with the -e switch > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [INFO] Total time: 23 seconds > > >>>>> > >>>> [INFO] Finished at: Sat Jul 30 19:19:23 CEST 2011 > > >>>>> > >>>> [INFO] Final Memory: 34M/350M > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> > > >>>>> > >>>> ok then, trying to fix the license for that file... > > >>>>> > >>>> also I've seen that it now work from eclipse when on pom.xml > Run > > >>>>> > >>>> As->Maven install > > >>>>> > >>>> [INFO] Checking licenses... > > >>>>> > >>>> [INFO] Missing header in: > > >>>>> > >>>> E:\wrkspc\bdb-index-fork\src\test\java\AllTests.java > > >>>>> > >>>> [INFO] Missing header in: > > >>>>> > >>>> > > >>>>> > E:\wrkspc\bdb-index-fork\src\test\java\org\neo4j\index\bdbje\RawBDBSpeed.java > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [INFO] BUILD FAILURE > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [INFO] Total time: 1.578s > > >>>>> > >>>> [INFO] Finished at: Sat Jul 30 19:25:02 CEST 2011 > > >>>>> > >>>> [INFO] Final Memory: 16M/154M > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [ERROR] Failed to execute goal > > >>>>> > >>>> > com.mycila.maven-license-plugin:maven-license-plugin:1.9.0:check > > >>>>> > >>>> (check-licenses) on project neo4j-berkeleydb-je-index: Some > file > > >>>>> > >>>> s do not have the expected license header -> [Help 1] > > >>>>> > >>>> > > >>>>> > >>>> Ok after fixing the licenses for those 2 files, running from > > >>>>> eclipse > > >>>>> > >>>> yields: > > >>>>> > >>>> > > >>>>> > >>>> [INFO] Scanning for projects... > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [INFO] Building neo4j-berkeleydb-je-index 0.1-SNAPSHOT > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [INFO] > > >>>>> > >>>> [INFO] --- maven-enforcer-plugin:1.0-beta-1:enforce > > >>>>> (enforce-maven) @ > > >>>>> > >>>> neo4j-berkeleydb-je-index --- > > >>>>> > >>>> [INFO] > > >>>>> > >>>> [INFO] --- maven-license-plugin:1.9.0:check (check-licenses) > @ > > >>>>> > >>>> neo4j-berkeleydb-je-index --- > > >>>>> > >>>> [INFO] Checking licenses... > > >>>>> > >>>> [INFO] > > >>>>> > >>>> [INFO] --- maven-resources-plugin:2.4.3:resources > > >>>>> (default-resources) @ > > >>>>> > >>>> neo4j-berkeleydb-je-index --- > > >>>>> > >>>> [WARNING] The POM for > > >>>>> org.apache.maven:maven-plugin-api:jar:2.0.6 is > > >>>>> > >>>> missing, no dependency information available > > >>>>> > >>>> [WARNING] The POM for > org.apache.maven:maven-project:jar:2.0.6 > > >>>>> is > > >>>>> > >>>> missing, no dependency information available > > >>>>> > >>>> [WARNING] The POM for org.apache.maven:maven-core:jar:2.0.6 > is > > >>>>> missing, > > >>>>> > >>>> no dependency information available > > >>>>> > >>>> [WARNING] The POM for > org.apache.maven:maven-artifact:jar:2.0.6 > > >>>>> is > > >>>>> > >>>> missing, no dependency information available > > >>>>> > >>>> [WARNING] The POM for > org.apache.maven:maven-settings:jar:2.0.6 > > >>>>> is > > >>>>> > >>>> missing, no dependency information available > > >>>>> > >>>> [WARNING] The POM for org.apache.maven:maven-model:jar:2.0.6 > is > > >>>>> missing, > > >>>>> > >>>> no dependency information available > > >>>>> > >>>> [WARNING] The POM for > org.apache.maven:maven-monitor:jar:2.0.6 > > >>>>> is > > >>>>> > >>>> missing, no dependency information available > > >>>>> > >>>> [WARNING] The POM for > > >>>>> > >>>> org.apache.maven.shared:maven-filtering:jar:1.0-beta-4 is > > >>>>> missing, no > > >>>>> > >>>> dependency information available > > >>>>> > >>>> [WARNING] The POM for > > >>>>> org.codehaus.plexus:plexus-interpolation:jar:1.13 > > >>>>> > >>>> is missing, no dependency information available > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [INFO] BUILD FAILURE > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [INFO] Total time: 1.780s > > >>>>> > >>>> [INFO] Finished at: Sat Jul 30 19:32:06 CEST 2011 > > >>>>> > >>>> [INFO] Final Memory: 16M/154M > > >>>>> > >>>> [INFO] > > >>>>> > >>>> > > >>>>> > ------------------------------------------------------------------------ > > >>>>> > >>>> [ERROR] Failed to execute goal > > >>>>> > >>>> > org.apache.maven.plugins:maven-resources-plugin:2.4.3:resources > > >>>>> > >>>> (default-resources) on project neo4j-berkeleydb-je-index: > > >>>>> Executi > > >>>>> > >>>> on default-resources of goal > > >>>>> > >>>> > org.apache.maven.plugins:maven-resources-plugin:2.4.3:resources > > >>>>> failed: > > >>>>> > >>>> Plugin org.apache.maven.plugins:maven-resources-plugin:2.4. > > >>>>> > >>>> 3 or one of its dependencies could not be resolved: The > > >>>>> following > > >>>>> > >>>> artifacts could not be resolved: > > >>>>> > >>>> org.apache.maven.shared:maven-filtering:jar:1.0-beta-4, > org.c > > >>>>> > >>>> odehaus.plexus:plexus-interpolation:jar:1.13: The repository > > >>>>> system is > > >>>>> > >>>> offline but the artifact > > >>>>> > >>>> org.apache.maven.shared:maven-filtering:jar:1.0-beta-4 is > not av > > >>>>> > >>>> ailable in the local repository. -> [Help 1] > > >>>>> > >>>> [ERROR] > > >>>>> > >>>> [ERROR] To see the full stack trace of the errors, re-run > Maven > > >>>>> with the > > >>>>> > >>>> -e switch. > > >>>>> > >>>> [ERROR] Re-run Maven using the -X switch to enable full > debug > > >>>>> logging. > > >>>>> > >>>> [ERROR] > > >>>>> > >>>> [ERROR] For more information about the errors and possible > > >>>>> solutions, > > >>>>> > >>>> please read the following articles: > > >>>>> > >>>> [ERROR] [Help 1] > > >>>>> > >>>> > > >>>>> > http://cwiki.apache.org/confluence/display/MAVEN/PluginResolutionException > > >>>>> > >>>> > > >>>>> > >>>> *BOLD *part :) > > >>>>> > >>>> Running from command line, but on a just now downloaded zip > > >>>>> file(as you > > >>>>> > >>>> said), > > >>>>> > >>>> it works (thus my eclipse maven still needs some work, ie. > maybe > > >>>>> allow > > >>>>> > >>>> it internet access even though it's on ask in firewall) > > >>>>> > >>>> I mean I do see those errors that you said you're seeing... > > >>>>> can't really > > >>>>> > >>>> paste them here from terminal they will be broken with 80 > chars > > >>>>> per line > > >>>>> > >>>> > > >>>>> > >>>> In eclipse without maven, running AllTests, although the > tests > > >>>>> do pass, > > >>>>> > >>>> I failed to see that (possibly) the same exception(s) thrown > by > > >>>>> maven > > >>>>> > >>>> install, are happening on console. But not when tests are > run > > >>>>> each > > >>>>> > >>>> individually. So, your errors happen both with mvn install > and > > >>>>> AllTests > > >>>>> > >>>> (which runs them both one after the other, too). So that was > a > > >>>>> failure to > > >>>>> > >>>> notice on my part :) that counting from 0 to 100 on console > > >>>>> must've moved up > > >>>>> > >>>> the exceptions and since tests were all success, I didn't > scroll > > >>>>> up. > > >>>>> > >>>> > > >>>>> > >>>> Trying to fix, > > >>>>> > >>>> > > >>>>> > >>>> > > >>>>> > >>>> > > >>>>> > >>>> On Sat, Jul 30, 2011 at 3:28 PM, Niels Hoogeveen < > > >>>>> > >>>> pd_aficion...@hotmail.com> wrote: > > >>>>> > >>>> > > >>>>> > >>>>> > > >>>>> > >>>>> I use the download option on Github expand the zip in a > > >>>>> directory and > > >>>>> > >>>>> run mvn install in that directory without any problems. > > >>>>> > >>>>> Niels > > >>>>> > >>>>> > > >>>>> > >>>>> > Date: Sat, 30 Jul 2011 13:39:15 +0200 > > >>>>> > >>>>> > From: cyuczie...@gmail.com > > >>>>> > >>>>> > To: user@lists.neo4j.org > > >>>>> > >>>>> > Subject: Re: [Neo4j] bdb-index > > >>>>> > >>>>> > > > >>>>> > >>>>> > "When running the mvn install, both tests are ran after > > >>>>> another." > > >>>>> > >>>>> > Since I didn't use mvn (xD) I ran the tests manually one > by > > >>>>> one, but > > >>>>> > >>>>> what > > >>>>> > >>>>> > you say makes sense, it's likely the tests fail when ran > one > > >>>>> after > > >>>>> > >>>>> the > > >>>>> > >>>>> > other, I'll see what happens with an @Suite > > >>>>> > >>>>> > since there are only 2 junit tests, with @Suite they work > > >>>>> > >>>>> > Let's see if I could run mvn install (btw, avoided mvn so > far > > >>>>> because > > >>>>> > >>>>> I > > >>>>> > >>>>> > cannot install the git plugin for some reason and that > other > > >>>>> error I > > >>>>> > >>>>> get) > > >>>>> > >>>>> > Looks like I still need to find out how to fix this > error: > > >>>>> > >>>>> > [ERROR] The project > > >>>>> > >>>>> org.neo4j:neo4j-berkeleydb-je-index:0.1-SNAPSHOT > > >>>>> > >>>>> > (E:\wrkspc\bdb-index-fork\pom.xml) has 1 error > > >>>>> > >>>>> > [ERROR] Non-resolvable parent POM: The repository > system > > >>>>> is > > >>>>> > >>>>> offline but > > >>>>> > >>>>> > the artifact org.neo4j:parent-central:pom:18 is not > available > > >>>>> in the > > >>>>> > >>>>> local > > >>>>> > >>>>> > repository. and 'parent.relativePath' points at wrong > local > > >>>>> POM @ > > >>>>> > >>>>> line 3, > > >>>>> > >>>>> > column 11 -> [Help 2] > > >>>>> > >>>>> > > > >>>>> > >>>>> > before I could do anything with maven... > > >>>>> > >>>>> > I'll skip trying to make maven to work for me for now, > don't > > >>>>> feel > > >>>>> > >>>>> like it :) > > >>>>> > >>>>> > > > >>>>> > >>>>> > *I'm not qualified to fix this with maven, sorry* > > >>>>> > >>>>> > John > > >>>>> > >>>>> > > > >>>>> > >>>>> > On Fri, Jul 29, 2011 at 5:16 PM, Niels Hoogeveen > > >>>>> > >>>>> > <pd_aficion...@hotmail.com>wrote: > > >>>>> > >>>>> > > > >>>>> > >>>>> > > > > >>>>> > >>>>> > > Hi John, > > >>>>> > >>>>> > > Thanks for looking into this. > > >>>>> > >>>>> > > I am still seeing the same error I had before. When > running > > >>>>> the mvn > > >>>>> > >>>>> > > install, both tests are ran after another. For some > reason > > >>>>> the > > >>>>> > >>>>> transaction > > >>>>> > >>>>> > > log sees an unclean shutdown and tries to commit > pending > > >>>>> > >>>>> transactions. > > >>>>> > >>>>> > > During that process the index names of the bdb indexes > are > > >>>>> being > > >>>>> > >>>>> retrieved > > >>>>> > >>>>> > > from binary storage. Here something goes wrong, because > the > > >>>>> index > > >>>>> > >>>>> name > > >>>>> > >>>>> > > returned is garbage, so the recovery process fails > because > > >>>>> it can't > > >>>>> > >>>>> find the > > >>>>> > >>>>> > > right index files. > > >>>>> > >>>>> > > Niels > > >>>>> > >>>>> > > > > >>>>> > >>>>> > > > Date: Fri, 29 Jul 2011 07:48:43 +0200 > > >>>>> > >>>>> > > > From: cyuczie...@gmail.com > > >>>>> > >>>>> > > > To: user@lists.neo4j.org > > >>>>> > >>>>> > > > Subject: Re: [Neo4j] bdb-index > > >>>>> > >>>>> > > > > > >>>>> > >>>>> > > > I forked and "fixed", the tests are all working now: > > >>>>> > >>>>> > > > https://github.com/13th-floor/bdb-index > > >>>>> > >>>>> > > > Let me know if you want me to do a pull request, ... > > >>>>> sadly I > > >>>>> > >>>>> applied > > >>>>> > >>>>> > > > formatting on RawBDBSpeed and the diff doesn't look > > >>>>> pretty if > > >>>>> > >>>>> you're > > >>>>> > >>>>> > > trying > > >>>>> > >>>>> > > > to see what changed > > >>>>> > >>>>> > > > > > >>>>> > >>>>> > > > John. > > >>>>> > >>>>> > > > > > >>>>> > >>>>> > > > > > >>>>> > >>>>> > > > On Thu, Jul 28, 2011 at 7:36 PM, Niels Hoogeveen > > >>>>> > >>>>> > > > <pd_aficion...@hotmail.com>wrote: > > >>>>> > >>>>> > > > > > >>>>> > >>>>> > > > > > > >>>>> > >>>>> > > > > Trying to find something useful to hide the > > >>>>> implementation book > > >>>>> > >>>>> keeping > > >>>>> > >>>>> > > of > > >>>>> > >>>>> > > > > Enhanced API, I tried out dbd-index as can be found > > >>>>> here: > > >>>>> > >>>>> > > > > https://github.com/peterneubauer/bdb-index > > >>>>> > >>>>> > > > > It looks interesting, but fails its tests. When > > >>>>> recovering it > > >>>>> > >>>>> performs > > >>>>> > >>>>> > > > > BerkeleyDbCommand#readCommand from the log. The > > >>>>> retrieved > > >>>>> > >>>>> indexName is > > >>>>> > >>>>> > > not > > >>>>> > >>>>> > > > > actually garbage. I would like to help make this > > >>>>> component > > >>>>> > >>>>> workable, > > >>>>> > >>>>> > > but > > >>>>> > >>>>> > > > > area of the database is a bit beyond the scope that > I > > >>>>> know. > > >>>>> > >>>>> > > > > I know this is completely unsupported software, but > can > > >>>>> someone > > >>>>> > >>>>> give me > > >>>>> > >>>>> > > > > some pointers on how to fix this issue? > > >>>>> > >>>>> > > > > Niels > > >>>>> > >>>>> > > > > _______________________________________________ > > >>>>> > >>>>> > > > > Neo4j mailing list > > >>>>> > >>>>> > > > > User@lists.neo4j.org > > >>>>> > >>>>> > > > > https://lists.neo4j.org/mailman/listinfo/user > > >>>>> > >>>>> > > > > > > >>>>> > >>>>> > > > _______________________________________________ > > >>>>> > >>>>> > > > Neo4j mailing list > > >>>>> > >>>>> > > > User@lists.neo4j.org > > >>>>> > >>>>> > > > https://lists.neo4j.org/mailman/listinfo/user > > >>>>> > >>>>> > > > > >>>>> > >>>>> > > _______________________________________________ > > >>>>> > >>>>> > > Neo4j mailing list > > >>>>> > >>>>> > > User@lists.neo4j.org > > >>>>> > >>>>> > > https://lists.neo4j.org/mailman/listinfo/user > > >>>>> > >>>>> > > > > >>>>> > >>>>> > _______________________________________________ > > >>>>> > >>>>> > Neo4j mailing list > > >>>>> > >>>>> > User@lists.neo4j.org > > >>>>> > >>>>> > https://lists.neo4j.org/mailman/listinfo/user > > >>>>> > >>>>> > > >>>>> > >>>>> _______________________________________________ > > >>>>> > >>>>> Neo4j mailing list > > >>>>> > >>>>> User@lists.neo4j.org > > >>>>> > >>>>> https://lists.neo4j.org/mailman/listinfo/user > > >>>>> > >>>>> > > >>>>> > >>>> > > >>>>> > >>>> > > >>>>> > >>> > > >>>>> > >> > > >>>>> > > > > >>>>> > _______________________________________________ > > >>>>> > Neo4j mailing list > > >>>>> > User@lists.neo4j.org > > >>>>> > https://lists.neo4j.org/mailman/listinfo/user > > >>>>> > > >>>>> _______________________________________________ > > >>>>> Neo4j mailing list > > >>>>> User@lists.neo4j.org > > >>>>> https://lists.neo4j.org/mailman/listinfo/user > > >>>>> > > >>>> > > >>>> > > >>> > > >> > > > > > _______________________________________________ > > Neo4j mailing list > > User@lists.neo4j.org > > https://lists.neo4j.org/mailman/listinfo/user > > _______________________________________________ > Neo4j mailing list > User@lists.neo4j.org > https://lists.neo4j.org/mailman/listinfo/user > _______________________________________________ Neo4j mailing list User@lists.neo4j.org https://lists.neo4j.org/mailman/listinfo/user
