Hi Ian, I did make sure that all ports mentioned in the osx-macports.cfg file were done before attempting a build. I've followed your suggestion on rebuilding and have pasted the build log to http://pastebin.com/ka7c3QT5
Thanks for your help. Comer On Tue, May 19, 2015 at 6:27 PM, Ian Hinder <[email protected]> wrote: > > On 19 May 2015, at 21:03, Comer Duncan <[email protected]> wrote: > > I have tried to build the new release on my local macbook. I am running > Yosemite and am using the optionlist for macports. Here is the part of the > make which chokes: > . > . > . > Undefined symbols for architecture x86_64: > "MPI::Win::Free()", referenced from: > vtable for MPI::Win in libthorn_PeriodicCarpet.a(periodic.cc.o) > vtable for MPI::Win in libthorn_Carpet.a(helpers.cc.o) > vtable for MPI::Win in > libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o) > vtable for MPI::Win in libthorn_CarpetIOASCII.a(ioascii.cc.o) > vtable for MPI::Win in libthorn_CarpetIOBasic.a(iobasic.cc.o) > vtable for MPI::Win in libthorn_CarpetIOHDF5.a(Input.cc.o) > vtable for MPI::Win in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o) > ... > "MPI::Comm::Comm()", referenced from: > MPI::Intercomm::Merge(bool) const in > libthorn_PeriodicCarpet.a(periodic.cc.o) > MPI::Intracomm::Split(int, int) const in > libthorn_PeriodicCarpet.a(periodic.cc.o) > MPI::Intracomm::Create(MPI::Group const&) const in > libthorn_PeriodicCarpet.a(periodic.cc.o) > MPI::Graphcomm::Clone() const in > libthorn_PeriodicCarpet.a(periodic.cc.o) > MPI::Cartcomm::Clone() const in > libthorn_PeriodicCarpet.a(periodic.cc.o) > MPI::Intracomm::Clone() const in > libthorn_PeriodicCarpet.a(periodic.cc.o) > MPI::Intracomm::Create_graph(int, int const*, int const*, bool) > const in libthorn_PeriodicCarpet.a(periodic.cc.o) > ... > "MPI::Datatype::Free()", referenced from: > vtable for MPI::Datatype in libthorn_PeriodicCarpet.a(periodic.cc.o) > vtable for MPI::Datatype in libthorn_Carpet.a(helpers.cc.o) > vtable for MPI::Datatype in > libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o) > vtable for MPI::Datatype in libthorn_CarpetIOASCII.a(ioascii.cc.o) > vtable for MPI::Datatype in libthorn_CarpetIOBasic.a(iobasic.cc.o) > vtable for MPI::Datatype in libthorn_CarpetIOHDF5.a(Input.cc.o) > vtable for MPI::Datatype in > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o) > ... > "_ompi_mpi_cxx_op_intercept", referenced from: > MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype > const&), bool) in libthorn_PeriodicCarpet.a(periodic.cc.o) > MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype > const&), bool) in libthorn_Carpet.a(helpers.cc.o) > MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype > const&), bool) in libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o) > MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype > const&), bool) in libthorn_CarpetIOASCII.a(ioascii.cc.o) > MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype > const&), bool) in libthorn_CarpetIOBasic.a(iobasic.cc.o) > MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype > const&), bool) in libthorn_CarpetIOHDF5.a(Input.cc.o) > MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype > const&), bool) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o) > ... > ld: symbol(s) not found for architecture x86_64 > collect2: error: ld returned 1 exit status > make[1]: *** [/Users/comerduncan/Cactus/exe/cactus_sim] Error 1 > make: *** [sim] Error 2 > > Here is the build I did: > > simfactory/bin/sim build > --optionlist=/Users/comerduncan/Cactus/simfactory/mdb/optionlists/osx-macports.cfg > > Can you please help me figure out what went wrong? > > > Hi Comer, > > My guess would be that there might be more than one version of MPI > installed, or something in the MPI configuration script didn't work quite > right. Did you install all the ports recommended in the comment in the > os-macports.cfg optionlist? Can you post the output from the full build? > I suggest to remove the configuration > > rm -rf configs/sim > > and then build, keeping all output: > > simfactory/bin/sim build --optionlist=osx-macports.cfg >build.log 2>&1 > > You could then copy and paste build.log into http://pastebin.com and > include the link in your reply (to avoid having a large attachment on the > mailing list). > > -- > Ian Hinder > http://members.aei.mpg.de/ianhin > >
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