The cluster is uniform - the same version of OS throughout (Rocks 5.4 with CentOS 5.5). SGE was installed as a roll during the Rocks cluster installation.
******************************** qconf -sconfl pauli.local compute-0-0.local compute-1-0.local ******************************** Since the OS is the same throughout, I removed the local configurations on compute nodes qconf -dconf compute-0-0 qconf -dconf compute-1-0 Now when I submit a job, I don't get any notification. Best, g -- Gowtham Advanced Research Support IT User Services, Michigan Tech On Wed, 15 Jun 2011, Reuti wrote: | Okay, | | is you cluster uniform or do you have different platforms (i.e. OSes)? Depending on the way you installed SGE there may be local configurations created: | | $ qconf -sconfl | | You either have to change all the local configurations, or when the OS is the same on all nodes remove them: | | $ qconf -dconf node01 | | and so on. | | -- Reuti | | | Am 15.06.2011 um 22:56 schrieb Gowtham: | | > | > | > I tried - included the script you gave below into | > | > /share/apps/sbin/mail_wrapper.sh | > | > Changed permissions to 755 | > | > Then did 'qconf -mconf', changed the 'mailer' to | > /share/apps/sbin/mail_wrapper.sh | > | > Submitted a job via qsub (same hello_world.sh) but the | > headers (or the body) of the email did not change. | > | > Help please? | > | > Best, | > g | > | > -- | > Gowtham | > Advanced Research Support | > IT User Services, Michigan Tech | > | > | > On Wed, 15 Jun 2011, Gowtham wrote: | > | > | | > | I'll give this a try. Personally, I'd actually prefer a | > | non-python version. | > | | > | Best, | > | g | > | | > | -- | > | Gowtham | > | Advanced Research Support | > | IT User Services, Michigan Tech | > | | > | | > | On Wed, 15 Jun 2011, Reuti wrote: | > | | > | | Am 15.06.2011 um 22:28 schrieb Gowtham: | > | | | > | | > Here it is (located /share/apps/sbin/ - so, it is available | > | | > for all compute nodes): | > | | > | > | | > taken from | > | | > | > | | > http://gridengine.markmail.org/search/?q=sge+mail+header+ben#query:sge%20mail%20header%20ben+page:1+mid:azhmwbsrn62akprk+state:results | > | | > | > | | | > | | Sorry, I missed the script. The sender you could also adjust in postfix canonical rules I think or like below in the script itself. Would you mind a non-Python one? | > | | | > | | #!/bin/sh | > | | (cat; echo; echo; echo "Please do not reply to this email") | mail -s "$2" "$3" -- -f "SGE Admin <[email protected]>" | > | | | > | | -- Reuti | > | | | > | | | > | | > ********************************************************* | > | | > #! /usr/bin/python | > | | > | > | | > # mail_wrapper.py | > | | > | > | | > from optparse import OptionParser | > | | > from email.MIMEText import MIMEText | > | | > import subprocess | > | | > import sys | > | | > import os | > | | > import re | > | | > | > | | > # Parse options | > | | > parser = OptionParser() | > | | > parser.add_option("-s", dest="subject", default='SGE job | > | | > notification') | > | | > opts, recips = parser.parse_args() | > | | > | > | | > # Set email from and to, including any necessary | > | | > substitutions | > | | > email_re = re.compile("@\w+\.cluster\.ourdomain$") | > | | > mailto = [email_re.sub("@ourmailhost.ourdomain", x) for x | > | | > in recips] | > | | > mailfrom = 'SGE admin <sge-admin@ourdomain>' | > | | > | > | | > # Create email text | > | | > msg = MIMEText(sys.stdin.read()) | > | | > msg['Subject'] = opts.subject | > | | > msg['From'] = mailfrom | > | | > msg['To'] = ", ".join(mailto) | > | | > | > | | > # Send email via sendmail binary | > | | > p = subprocess.Popen(['/usr/sbin/sendmail', '-oi'] + mailto, | > | | > stdin=subprocess.PIPE) | > | | > p.stdin.write(msg.as_string()) | > | | > p.stdin.close() | > | | > sys.exit(p.wait()) | > | | > ********************************************************* | > | | > | > | | > Then did | > | | > | > | | > qconf -mconf | > | | > | > | | > and changed | > | | > | > | | > mailer /bin/mail | > | | > | > | | > to | > | | > | > | | > mailer /share/apps/sbin/mail_wrapper.py | > | | > | > | | > | > | | > Best, | > | | > g | > | | > | > | | > -- | > | | > Gowtham | > | | > Advanced Research Support | > | | > IT User Services, Michigan Tech | > | | > | > | | > | > | | > On Wed, 15 Jun 2011, Reuti wrote: | > | | > | > | | > | What does you wrapper script look like, can you post it? | > | | > | | > | | > | -- Reuti | > | | > | | > | | > | | > | | > | Am 15.06.2011 um 22:20 schrieb Gowtham: | > | | > | | > | | > | > | > | | > | > Could you please elaborate on your question? I don't quite | > | | > | > understand it. | > | | > | > | > | | > | > Best, | > | | > | > g | > | | > | > | > | | > | > -- | > | | > | > Gowtham | > | | > | > Advanced Research Support | > | | > | > IT User Services, Michigan Tech | > | | > | > | > | | > | > | > | | > | > On Wed, 15 Jun 2011, Reuti wrote: | > | | > | > | > | | > | > | Hi, | > | | > | > | | > | | > | > | Am 15.06.2011 um 22:01 schrieb Gowtham: | > | | > | > | | > | | > | > | > We are using Rocks 5.4 (with CentOS 5.5) and have | > | | > | > | > SGE 6.2u5 as queing system. For informative (and to an extent, decorative) purposes, we would like to modify | > | | > | > | > the headers of emails sent out by SGE. | > | | > | > | > | > | | > | > | > I have checked the mailing list and tried the approach | > | | > | > | > given in | > | | > | > | > | > | | > | > | > http://gridengine.markmail.org/search/?q=sge+mail+header+ben#query:sge%20mail%20header%20ben+page:1+mid:g3ovaeqfpyqmmyqt+state:results | > | | > | > | > | > | | > | > | > but it didn't seem to do the trick. | > | | > | > | | > | | > | > | what did you supply in detail as script - it's available (accessible) on all nodes? | > | | > | > | | > | | > | > | -- Reuti | > | | > | > | | > | | > | > | | > | | > | > | > | > | | > | > | > ************* What it is now ************* | > | | > | > | > | > | | > | > | > Date: Wed, 15 Jun 2011 15:42:55 -0400 (EDT) | > | | > | > | > From: root <root@local> | > | | > | > | > To: [email protected] | > | | > | > | > Subject: Job 36 (hello_world.sh) Complete | > | | > | > | > | > | | > | > | > Job 36 (hello_world.sh) Complete | > | | > | > | > User = john | > | | > | > | > Queue = [email protected] | > | | > | > | > Host = compute-0-1.local | > | | > | > | > Start Time = 06/15/2011 15:42:54 | > | | > | > | > End Time = 06/15/2011 15:42:56 | > | | > | > | > User Time = 00:00:00 | > | | > | > | > System Time = 00:00:00 | > | | > | > | > Wallclock Time = 00:00:00 | > | | > | > | > CPU = 00:00:00 | > | | > | > | > Max vmem = NA | > | | > | > | > Exit Status = 0 | > | | > | > | > | > | | > | > | > | > | | > | > | > ************* What we would like to see ************* | > | | > | > | > | > | | > | > | > Date: Wed, 15 Jun 2011 15:42:55 -0400 (EDT) | > | | > | > | > From: SGE Admin <[email protected]> | > | | > | > | > To: [email protected] | > | | > | > | > Subject: pauli.csa - Job 36 (hello_world.sh) Complete | > | | > | > | > | > | | > | > | > Job 36 (hello_world.sh) Complete | > | | > | > | > User = john | > | | > | > | > Queue = [email protected] | > | | > | > | > Host = compute-0-1.local | > | | > | > | > Start Time = 06/15/2011 15:42:54 | > | | > | > | > End Time = 06/15/2011 15:42:56 | > | | > | > | > User Time = 00:00:00 | > | | > | > | > System Time = 00:00:00 | > | | > | > | > Wallclock Time = 00:00:00 | > | | > | > | > CPU = 00:00:00 | > | | > | > | > Max vmem = NA | > | | > | > | > Exit Status = 0 | > | | > | > | > | > | | > | > | > | > | | > | > | > Please do not reply to this email. | > | | > | > | > | > | | > | > | > ***************************************************** | > | | > | > | > | > | | > | > | > | > | | > | > | > If you could share any other trick or script or wrapper that will accomplish this, it'd be awesome. | > | | > | > | > | > | | > | > | > Best regards, | > | | > | > | > g | > | | > | > | > | > | | > | > | > -- | > | | > | > | > Gowtham | > | | > | > | > Advanced IT Research Support | > | | > | > | > Michigan Technological University | > | | > | > | > _______________________________________________ | > | | > | > | > users mailing list | > | | > | > | > [email protected] | > | | > | > | > https://gridengine.org/mailman/listinfo/users | > | | > | > | | > | | > | > | | > | | > | | > | | > | | > | | | > | | | > | | | _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
