Ok - I see some light now. I logged into the compute node
(compute-0-0) and ran
***************************************
echo "The line to send" | /share/apps/sbin/mail_wrapper.sh
-s "The subject" [email protected]
***************************************
No errors on command line; I did receive an email with
***************************************
From: "root" <[email protected]>
Subject: The subject
The line to send
Please do not reply to this email
***************************************
Best,
g
--
Gowtham
Advanced Research Support
IT User Services, Michigan Tech
On Wed, 15 Jun 2011, Reuti wrote:
| Am 15.06.2011 um 23:11 schrieb Gowtham:
|
| >
| > The cluster is uniform - the same version of OS throughout
| > (Rocks 5.4 with CentOS 5.5). SGE was installed as a roll
| > during the Rocks cluster installation.
| >
| > ********************************
| > qconf -sconfl
| >
| > pauli.local
| > compute-0-0.local
| > compute-1-0.local
| >
| > ********************************
| >
| > Since the OS is the same throughout, I removed the local
| > configurations on compute nodes
| >
| > qconf -dconf compute-0-0
| > qconf -dconf compute-1-0
| >
| >
| >
| > Now when I submit a job, I don't get any notification.
|
| Fine, so it's honoring the new configuration. What happens when you log in to
a node and execute the script by hand:
|
| $ echo "The line to send" | /share/apps/sbin/mail_wrapper.sh -s "The subject"
gowtham
|
| or whatever your username is.
|
| -- Reuti
|
|
| >
| > Best,
| > g
| >
| > --
| > Gowtham
| > Advanced Research Support
| > IT User Services, Michigan Tech
| >
| >
| > On Wed, 15 Jun 2011, Reuti wrote:
| >
| > | Okay,
| > |
| > | is you cluster uniform or do you have different platforms (i.e. OSes)?
Depending on the way you installed SGE there may be local configurations
created:
| > |
| > | $ qconf -sconfl
| > |
| > | You either have to change all the local configurations, or when the OS is
the same on all nodes remove them:
| > |
| > | $ qconf -dconf node01
| > |
| > | and so on.
| > |
| > | -- Reuti
| > |
| > |
| > | Am 15.06.2011 um 22:56 schrieb Gowtham:
| > |
| > | >
| > | >
| > | > I tried - included the script you gave below into
| > | >
| > | > /share/apps/sbin/mail_wrapper.sh
| > | >
| > | > Changed permissions to 755
| > | >
| > | > Then did 'qconf -mconf', changed the 'mailer' to
| > | > /share/apps/sbin/mail_wrapper.sh
| > | >
| > | > Submitted a job via qsub (same hello_world.sh) but the
| > | > headers (or the body) of the email did not change.
| > | >
| > | > Help please?
| > | >
| > | > Best,
| > | > g
| > | >
| > | > --
| > | > Gowtham
| > | > Advanced Research Support
| > | > IT User Services, Michigan Tech
| > | >
| > | >
| > | > On Wed, 15 Jun 2011, Gowtham wrote:
| > | >
| > | > |
| > | > | I'll give this a try. Personally, I'd actually prefer a
| > | > | non-python version.
| > | > |
| > | > | Best,
| > | > | g
| > | > |
| > | > | --
| > | > | Gowtham
| > | > | Advanced Research Support
| > | > | IT User Services, Michigan Tech
| > | > |
| > | > |
| > | > | On Wed, 15 Jun 2011, Reuti wrote:
| > | > |
| > | > | | Am 15.06.2011 um 22:28 schrieb Gowtham:
| > | > | |
| > | > | | > Here it is (located /share/apps/sbin/ - so, it is available
| > | > | | > for all compute nodes):
| > | > | | >
| > | > | | > taken from
| > | > | | >
| > | > | | >
http://gridengine.markmail.org/search/?q=sge+mail+header+ben#query:sge%20mail%20header%20ben+page:1+mid:azhmwbsrn62akprk+state:results
| > | > | | >
| > | > | |
| > | > | | Sorry, I missed the script. The sender you could also adjust in
postfix canonical rules I think or like below in the script itself. Would you
mind a non-Python one?
| > | > | |
| > | > | | #!/bin/sh
| > | > | | (cat; echo; echo; echo "Please do not reply to this email") | mail
-s "$2" "$3" -- -f "SGE Admin <[email protected]>"
| > | > | |
| > | > | | -- Reuti
| > | > | |
| > | > | |
| > | > | | > *********************************************************
| > | > | | > #! /usr/bin/python
| > | > | | >
| > | > | | > # mail_wrapper.py
| > | > | | >
| > | > | | > from optparse import OptionParser
| > | > | | > from email.MIMEText import MIMEText
| > | > | | > import subprocess
| > | > | | > import sys
| > | > | | > import os
| > | > | | > import re
| > | > | | >
| > | > | | > # Parse options
| > | > | | > parser = OptionParser()
| > | > | | > parser.add_option("-s", dest="subject", default='SGE job
| > | > | | > notification')
| > | > | | > opts, recips = parser.parse_args()
| > | > | | >
| > | > | | > # Set email from and to, including any necessary
| > | > | | > substitutions
| > | > | | > email_re = re.compile("@\w+\.cluster\.ourdomain$")
| > | > | | > mailto = [email_re.sub("@ourmailhost.ourdomain", x) for x
| > | > | | > in recips]
| > | > | | > mailfrom = 'SGE admin <sge-admin@ourdomain>'
| > | > | | >
| > | > | | > # Create email text
| > | > | | > msg = MIMEText(sys.stdin.read())
| > | > | | > msg['Subject'] = opts.subject
| > | > | | > msg['From'] = mailfrom
| > | > | | > msg['To'] = ", ".join(mailto)
| > | > | | >
| > | > | | > # Send email via sendmail binary
| > | > | | > p = subprocess.Popen(['/usr/sbin/sendmail', '-oi'] + mailto,
| > | > | | > stdin=subprocess.PIPE)
| > | > | | > p.stdin.write(msg.as_string())
| > | > | | > p.stdin.close()
| > | > | | > sys.exit(p.wait())
| > | > | | > *********************************************************
| > | > | | >
| > | > | | > Then did
| > | > | | >
| > | > | | > qconf -mconf
| > | > | | >
| > | > | | > and changed
| > | > | | >
| > | > | | > mailer /bin/mail
| > | > | | >
| > | > | | > to
| > | > | | >
| > | > | | > mailer /share/apps/sbin/mail_wrapper.py
| > | > | | >
| > | > | | >
| > | > | | > Best,
| > | > | | > g
| > | > | | >
| > | > | | > --
| > | > | | > Gowtham
| > | > | | > Advanced Research Support
| > | > | | > IT User Services, Michigan Tech
| > | > | | >
| > | > | | >
| > | > | | > On Wed, 15 Jun 2011, Reuti wrote:
| > | > | | >
| > | > | | > | What does you wrapper script look like, can you post it?
| > | > | | > |
| > | > | | > | -- Reuti
| > | > | | > |
| > | > | | > |
| > | > | | > | Am 15.06.2011 um 22:20 schrieb Gowtham:
| > | > | | > |
| > | > | | > | >
| > | > | | > | > Could you please elaborate on your question? I don't quite
| > | > | | > | > understand it.
| > | > | | > | >
| > | > | | > | > Best,
| > | > | | > | > g
| > | > | | > | >
| > | > | | > | > --
| > | > | | > | > Gowtham
| > | > | | > | > Advanced Research Support
| > | > | | > | > IT User Services, Michigan Tech
| > | > | | > | >
| > | > | | > | >
| > | > | | > | > On Wed, 15 Jun 2011, Reuti wrote:
| > | > | | > | >
| > | > | | > | > | Hi,
| > | > | | > | > |
| > | > | | > | > | Am 15.06.2011 um 22:01 schrieb Gowtham:
| > | > | | > | > |
| > | > | | > | > | > We are using Rocks 5.4 (with CentOS 5.5) and have
| > | > | | > | > | > SGE 6.2u5 as queing system. For informative (and to an
extent, decorative) purposes, we would like to modify
| > | > | | > | > | > the headers of emails sent out by SGE.
| > | > | | > | > | >
| > | > | | > | > | > I have checked the mailing list and tried the approach
| > | > | | > | > | > given in
| > | > | | > | > | >
| > | > | | > | > | >
http://gridengine.markmail.org/search/?q=sge+mail+header+ben#query:sge%20mail%20header%20ben+page:1+mid:g3ovaeqfpyqmmyqt+state:results
| > | > | | > | > | >
| > | > | | > | > | > but it didn't seem to do the trick.
| > | > | | > | > |
| > | > | | > | > | what did you supply in detail as script - it's available
(accessible) on all nodes?
| > | > | | > | > |
| > | > | | > | > | -- Reuti
| > | > | | > | > |
| > | > | | > | > |
| > | > | | > | > | >
| > | > | | > | > | > ************* What it is now *************
| > | > | | > | > | >
| > | > | | > | > | > Date: Wed, 15 Jun 2011 15:42:55 -0400 (EDT)
| > | > | | > | > | > From: root <root@local>
| > | > | | > | > | > To: [email protected]
| > | > | | > | > | > Subject: Job 36 (hello_world.sh) Complete
| > | > | | > | > | >
| > | > | | > | > | > Job 36 (hello_world.sh) Complete
| > | > | | > | > | > User = john
| > | > | | > | > | > Queue = [email protected]
| > | > | | > | > | > Host = compute-0-1.local
| > | > | | > | > | > Start Time = 06/15/2011 15:42:54
| > | > | | > | > | > End Time = 06/15/2011 15:42:56
| > | > | | > | > | > User Time = 00:00:00
| > | > | | > | > | > System Time = 00:00:00
| > | > | | > | > | > Wallclock Time = 00:00:00
| > | > | | > | > | > CPU = 00:00:00
| > | > | | > | > | > Max vmem = NA
| > | > | | > | > | > Exit Status = 0
| > | > | | > | > | >
| > | > | | > | > | >
| > | > | | > | > | > ************* What we would like to see *************
| > | > | | > | > | >
| > | > | | > | > | > Date: Wed, 15 Jun 2011 15:42:55 -0400 (EDT)
| > | > | | > | > | > From: SGE Admin <[email protected]>
| > | > | | > | > | > To: [email protected]
| > | > | | > | > | > Subject: pauli.csa - Job 36 (hello_world.sh) Complete
| > | > | | > | > | >
| > | > | | > | > | > Job 36 (hello_world.sh) Complete
| > | > | | > | > | > User = john
| > | > | | > | > | > Queue = [email protected]
| > | > | | > | > | > Host = compute-0-1.local
| > | > | | > | > | > Start Time = 06/15/2011 15:42:54
| > | > | | > | > | > End Time = 06/15/2011 15:42:56
| > | > | | > | > | > User Time = 00:00:00
| > | > | | > | > | > System Time = 00:00:00
| > | > | | > | > | > Wallclock Time = 00:00:00
| > | > | | > | > | > CPU = 00:00:00
| > | > | | > | > | > Max vmem = NA
| > | > | | > | > | > Exit Status = 0
| > | > | | > | > | >
| > | > | | > | > | >
| > | > | | > | > | > Please do not reply to this email.
| > | > | | > | > | >
| > | > | | > | > | > *****************************************************
| > | > | | > | > | >
| > | > | | > | > | >
| > | > | | > | > | > If you could share any other trick or script or wrapper
that will accomplish this, it'd be awesome.
| > | > | | > | > | >
| > | > | | > | > | > Best regards,
| > | > | | > | > | > g
| > | > | | > | > | >
| > | > | | > | > | > --
| > | > | | > | > | > Gowtham
| > | > | | > | > | > Advanced IT Research Support
| > | > | | > | > | > Michigan Technological University
| > | > | | > | > | > _______________________________________________
| > | > | | > | > | > users mailing list
| > | > | | > | > | > [email protected]
| > | > | | > | > | > https://gridengine.org/mailman/listinfo/users
| > | > | | > | > |
| > | > | | > | > |
| > | > | | > |
| > | > | | > |
| > | > | |
| > | > | |
| > | > |
| > |
| > |
|
|
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