hello all,
i got trouble to confgure a queue on SGE 6.2u5 (linux)
I have two machines amd64, with this topology: SCCSCC so the total of
cores is 8.
first, i defined a group:
# qconf -shgrp @qlong
group_name @qlong
hostlist charybde scylla
then a queue:
# qconf -sq long1
qname long1
hostlist @qlong
seq_no 0
load_thresholds np_load_avg=1.75
suspend_thresholds NONE
nsuspend 1
suspend_interval 00:05:00
priority 0
min_cpu_interval 00:05:00
processors UNDEFINED
qtype BATCH INTERACTIVE
ckpt_list NONE
pe_list make
rerun FALSE
slots 4
tmpdir /tmp
shell /bin/csh
prolog NONE
epilog NONE
shell_start_mode posix_compliant
starter_method NONE
suspend_method NONE
resume_method NONE
terminate_method NONE
notify 00:00:60
owner_list NONE
user_lists NONE
xuser_lists NONE
subordinate_list NONE
complex_values NONE
projects NONE
xprojects NONE
calendar NONE
initial_state default
s_rt INFINITY
h_rt INFINITY
s_cpu INFINITY
h_cpu INFINITY
s_fsize INFINITY
h_fsize INFINITY
s_data INFINITY
h_data INFINITY
s_stack INFINITY
h_stack INFINITY
s_core INFINITY
h_core INFINITY
s_rss INFINITY
h_rss INFINITY
s_vmem INFINITY
h_vmem INFINITY
but when i try to submit a job, it fails with:
% qsub -w v ./script1.sh
Job 14431 cannot run in PE "mpi_labo" because it only offers 0 slots
the beginning of the script is:
...
#$ -q long1
#$ -pe mpi_labo 6
and the PE is defined by:
qconf -sp mpi_labo
pe_name mpi_labo
slots 8
user_lists NONE
xuser_lists NONE
start_proc_args /bin/true
stop_proc_args /bin/true
allocation_rule $pe_slots
control_slaves TRUE
job_is_first_task FALSE
urgency_slots min
accounting_summary FALSE
If i try to submit with "-pe mpi_labo 4", it works. What am i missing?
I also tried to augment the value:
qconf -mq long1
slots 8
but in this case, the program executes his 8 threads on the same host,
that's not what i want;
thanks in advance for help,
gerard
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