I got it working again, there was already a proces of execd running that needed to be killed and then restart the services.
I'm trying to run a script now: #!/bin/bash #$-cwd #$-N SA #$-S /bin/sh #$-t 1-4200:1 /var/software/packages/Mathematica/7.0/Executables/math -run "teller=$SGE_TASK_ID;<< ModelCaCO31.m" but it gives the following output: stdin: is not a tty and this is the output of my qstat -f: queuename qtype resv/used/tot. load_avg arch states --------------------------------------------------------------------------------- [email protected] BIP 0/1/1 0.70 lx26-amd64 35 0.50000 SA root r 11/14/2012 09:57:47 1 1 --------------------------------------------------------------------------------- main.q@node0 BIP 0/24/24 27.71 lx26-amd64 35 0.50000 SA root r 11/14/2012 09:57:47 1 2 35 0.50000 SA root r 11/14/2012 09:57:47 1 3 35 0.50000 SA root r 11/14/2012 09:57:47 1 4 35 0.50000 SA root r 11/14/2012 09:57:47 1 5 35 0.50000 SA root r 11/14/2012 09:57:47 1 6 35 0.50000 SA root r 11/14/2012 09:57:47 1 7 35 0.50000 SA root r 11/14/2012 09:57:47 1 8 35 0.50000 SA root r 11/14/2012 09:57:47 1 9 35 0.50000 SA root r 11/14/2012 09:57:47 1 10 35 0.50000 SA root r 11/14/2012 09:57:47 1 11 35 0.50000 SA root r 11/14/2012 09:57:47 1 12 35 0.50000 SA root r 11/14/2012 09:57:47 1 13 35 0.50000 SA root r 11/14/2012 09:57:47 1 14 35 0.50000 SA root r 11/14/2012 09:57:47 1 15 35 0.50000 SA root r 11/14/2012 09:57:47 1 16 35 0.50000 SA root r 11/14/2012 09:57:47 1 17 35 0.50000 SA root r 11/14/2012 09:57:47 1 18 35 0.50000 SA root r 11/14/2012 09:57:47 1 19 35 0.50000 SA root r 11/14/2012 09:57:47 1 20 35 0.50000 SA root r 11/14/2012 09:57:47 1 21 35 0.50000 SA root r 11/14/2012 09:57:47 1 22 35 0.50000 SA root r 11/14/2012 09:57:47 1 23 35 0.50000 SA root r 11/14/2012 09:57:47 1 24 35 0.50000 SA root r 11/14/2012 09:57:47 1 25 ############################################################################ - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS ############################################################################ 35 0.50000 SA root qw 11/14/2012 09:57:38 1 26-4200:1 root@camilla:/nfs/share/sge# qstat -explain c -j 35 ============================================================== job_number: 35 exec_file: job_scripts/35 submission_time: Wed Nov 14 09:57:38 2012 owner: root uid: 0 group: root gid: 0 sge_o_home: /root sge_o_log_name: root sge_o_path: /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin sge_o_shell: /bin/bash sge_o_workdir: /nfs/share/sge sge_o_host: camilla account: sge cwd: /nfs/share/sge mail_list: root@camilla notify: FALSE job_name: SA jobshare: 0 shell_list: NONE:/bin/sh env_list: script_file: HistDisCaCO31.sh job-array tasks: 1-4200:1 usage 1: cpu=00:05:20, mem=105.16135 GBs, io=0.01537, vmem=1.110G, maxvmem=1.110G usage 2: cpu=00:04:17, mem=179.44371 GBs, io=0.01395, vmem=3.643G, maxvmem=3.643G usage 3: cpu=00:04:37, mem=191.69532 GBs, io=0.01394, vmem=3.657G, maxvmem=3.657G usage 4: cpu=00:04:34, mem=188.12645 GBs, io=0.01394, vmem=3.655G, maxvmem=3.655G usage 5: cpu=00:04:16, mem=180.18292 GBs, io=0.01394, vmem=3.636G, maxvmem=3.636G usage 6: cpu=00:04:22, mem=183.47616 GBs, io=0.01394, vmem=3.644G, maxvmem=3.644G usage 7: cpu=00:04:15, mem=179.89624 GBs, io=0.01400, vmem=3.640G, maxvmem=3.640G usage 8: cpu=00:04:55, mem=207.28643 GBs, io=0.01394, vmem=3.669G, maxvmem=3.669G usage 9: cpu=00:04:27, mem=184.86707 GBs, io=0.01394, vmem=3.653G, maxvmem=3.653G usage 10: cpu=00:04:14, mem=179.09446 GBs, io=0.01394, vmem=3.635G, maxvmem=3.635G usage 11: cpu=00:04:47, mem=195.80372 GBs, io=0.01400, vmem=3.668G, maxvmem=3.668G usage 12: cpu=00:04:49, mem=203.43895 GBs, io=0.01394, vmem=3.665G, maxvmem=3.665G usage 13: cpu=00:04:45, mem=196.67175 GBs, io=0.01394, vmem=3.663G, maxvmem=3.663G usage 14: cpu=00:04:24, mem=185.68047 GBs, io=0.01400, vmem=3.648G, maxvmem=3.648G usage 15: cpu=00:04:40, mem=195.96253 GBs, io=0.01394, vmem=3.656G, maxvmem=3.656G usage 16: cpu=00:04:11, mem=179.84016 GBs, io=0.01394, vmem=3.633G, maxvmem=3.633G usage 17: cpu=00:04:43, mem=196.21689 GBs, io=0.01394, vmem=3.662G, maxvmem=3.662G usage 18: cpu=00:04:37, mem=197.39875 GBs, io=0.01394, vmem=3.653G, maxvmem=3.653G usage 19: cpu=00:04:35, mem=191.55982 GBs, io=0.01394, vmem=3.653G, maxvmem=3.653G usage 20: cpu=00:04:26, mem=191.62928 GBs, io=0.01394, vmem=3.643G, maxvmem=3.643G usage 21: cpu=00:04:42, mem=197.87398 GBs, io=0.01394, vmem=3.660G, maxvmem=3.660G usage 22: cpu=00:04:36, mem=193.43107 GBs, io=0.01394, vmem=3.652G, maxvmem=3.652G usage 23: cpu=00:04:32, mem=193.12103 GBs, io=0.01394, vmem=3.652G, maxvmem=3.652G usage 24: cpu=00:04:25, mem=186.56485 GBs, io=0.01400, vmem=3.644G, maxvmem=3.644G usage 25: cpu=00:04:51, mem=201.81706 GBs, io=0.01400, vmem=3.669G, maxvmem=3.669G scheduling info: queue instance "main.q@camilla" dropped because it is full queue instance "main.q@node0" dropped because it is full All queues dropped because of overload or full not all array task may be started due to 'max_aj_instances' You guys know how this can be solved? 2012/11/13 Reuti <[email protected]> > Am 13.11.2012 um 13:42 schrieb jan roels: > > > Hi, > > > > I followed the following tutorial: > > > > > http://verahill.blogspot.be/2012/06/setting-up-sun-grid-engine-with-three.htmlon > how to install the SGE. It all went fine on my masternode but on my exec > node i have some troubles. > > > > First it gave the following error: > > > > 11/13/2012 13:44:43| main|node0|E|communication error for > "node0/execd/1" running on port 6445: "can't bind socket" > > Is there already something running on this port - any older version of the > execd? > > > > 11/13/2012 13:44:44| main|node0|E|commlib error: can't bind socket (no > additional information available) > > 11/13/2012 13:45:12| main|node0|C|abort qmaster registration due to > communication errors > > 11/13/2012 13:45:14| main|node0|W|daemonize error: child exited before > sending daemonize state > > > > but then i killed the proces and restarted the gridengine-execd but then > i get the following: > > > > /etc/init.d/gridengine-exec restart > > * Restarting Sun Grid Engine Execution Daemon sge_execd > error: can't resolve host name > > error: can't get configuration from qmaster -- backgrounding > > > > What can i do to fix this? > > Any firewall on the machines? Ports 6444 and 6445 need to be excluded. > > -- Reuti > > > _______________________________________________ > > users mailing list > > [email protected] > > https://gridengine.org/mailman/listinfo/users > >
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