I tried it with the root-account and with another account... both the same error
2012/11/22 Reuti <[email protected]> > Am 22.11.2012 um 12:30 schrieb jan roels: > > > Hi, > > > > qstat -j <jobid> didn't show the full error message, this one is the > full error message: > > > > 11/22/2012 12:26:11| main|camilla|E|shepherd of job 76.226 exited with > exit status = 27 > > 11/22/2012 12:26:11| main|camilla|E|can't open usage file > "active_jobs/76.226/usage" for job 76.226: No such file or directory > > 11/22/2012 12:26:11| main|camilla|E|11/22/2012 12:26:10 [0:11412]: > execvlp(/var/spool/gridengine/execd/camilla/job_scripts/76, > "/var/spool/gridengine/execd/camilla/job_scripts/76") failed: No such file > or directory > > Could be a permission problem. Everyone needs read-access to this > directory as the jobscript is executed from there. > > -- Reuti > > > > > > > > 2012/11/22 jan roels <[email protected]> > > Hi, > > > > Do you guys now what this error could be: > > > > error reason 2: 11/22/2012 11:12:25 [0:31220]: > execvlp(/var/spool/gridengine/execd/node0/job_scripts/69, "/var/spool > > error reason 3: 11/22/2012 11:12:25 [0:31221]: > execvlp(/var/spool/gridengine/execd/node0/job_scripts/69, "/var/spool > > > > this goes on as long as iets running... and my state went to: > > > > 69 0.50000 SA root Eqw 11/22/2012 09:12:05 1 > 1-500:1 > > 69 0.00000 SA root qw 11/22/2012 09:12:05 1 > 501-4200:1 > > > > This is the script i was running: > > > > #!/bin/bash > > #$-cwd > > #$-N SA > > #$-t 1-4200:1 > > > > /var/software/packages/Mathematica/7.0/Executables/math -run > "teller=$SGE_TASK_ID;<< ModelCaCO31.m" > > > > Hope somebody can fix the problem. > > > > Kind Regards > > > > > > 2012/11/14 Reuti <[email protected]> > > Am 14.11.2012 um 10:08 schrieb jan roels: > > > > > I got it working again, there was already a proces of execd running > that needed to be killed and then restart the services. > > > > > > I'm trying to run a script now: > > > > > > > > > #!/bin/bash > > > #$-cwd > > > #$-N SA > > > #$-S /bin/sh > > > #$-t 1-4200: > > > > Don't run scripts at root. If something goes wring it might trash your > machine(s). > > > > > > > /var/software/packages/Mathematica/7.0/Executables/math -run > "teller=$SGE_TASK_ID;<< ModelCaCO31.m" > > > > > > but it gives the following output: > > > > > > stdin: is not a tty > > > > It's just a warning - unless someone complains I would suggest to ignore > it. > > > > > > > and this is the output of my qstat -f: > > > > > > queuename qtype resv/used/tot. load_avg arch > states > > > > --------------------------------------------------------------------------------- > > > [email protected] BIP 0/1/1 0.70 > lx26-amd64 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 1 > > > > --------------------------------------------------------------------------------- > > > main.q@node0 BIP 0/24/24 27.71 > lx26-amd64 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 2 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 3 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 4 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 5 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 6 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 7 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 8 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 9 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 10 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 11 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 12 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 13 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 14 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 15 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 16 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 17 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 18 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 19 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 20 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 21 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 22 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 23 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 24 > > > 35 0.50000 SA root r 11/14/2012 09:57:47 > 1 25 > > > > > > > ############################################################################ > > > - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING > JOBS > > > > ############################################################################ > > > 35 0.50000 SA root qw 11/14/2012 09:57:38 > 1 26-4200:1 > > > > > > > > > root@camilla:/nfs/share/sge# qstat -explain c -j 35 > > > ============================================================== > > > job_number: 35 > > > exec_file: job_scripts/35 > > > submission_time: Wed Nov 14 09:57:38 2012 > > > owner: root > > > uid: 0 > > > group: root > > > gid: 0 > > > sge_o_home: /root > > > sge_o_log_name: root > > > sge_o_path: > /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin > > > sge_o_shell: /bin/bash > > > sge_o_workdir: /nfs/share/sge > > > sge_o_host: camilla > > > account: sge > > > cwd: /nfs/share/sge > > > mail_list: root@camilla > > > notify: FALSE > > > job_name: SA > > > jobshare: 0 > > > shell_list: NONE:/bin/sh > > > env_list: > > > script_file: HistDisCaCO31.sh > > > job-array tasks: 1-4200:1 > > > usage 1: cpu=00:05:20, mem=105.16135 GBs, > io=0.01537, vmem=1.110G, maxvmem=1.110G > > > usage 2: cpu=00:04:17, mem=179.44371 GBs, > io=0.01395, vmem=3.643G, maxvmem=3.643G > > > usage 3: cpu=00:04:37, mem=191.69532 GBs, > io=0.01394, vmem=3.657G, maxvmem=3.657G > > > usage 4: cpu=00:04:34, mem=188.12645 GBs, > io=0.01394, vmem=3.655G, maxvmem=3.655G > > > usage 5: cpu=00:04:16, mem=180.18292 GBs, > io=0.01394, vmem=3.636G, maxvmem=3.636G > > > usage 6: cpu=00:04:22, mem=183.47616 GBs, > io=0.01394, vmem=3.644G, maxvmem=3.644G > > > usage 7: cpu=00:04:15, mem=179.89624 GBs, > io=0.01400, vmem=3.640G, maxvmem=3.640G > > > usage 8: cpu=00:04:55, mem=207.28643 GBs, > io=0.01394, vmem=3.669G, maxvmem=3.669G > > > usage 9: cpu=00:04:27, mem=184.86707 GBs, > io=0.01394, vmem=3.653G, maxvmem=3.653G > > > usage 10: cpu=00:04:14, mem=179.09446 GBs, > io=0.01394, vmem=3.635G, maxvmem=3.635G > > > usage 11: cpu=00:04:47, mem=195.80372 GBs, > io=0.01400, vmem=3.668G, maxvmem=3.668G > > > usage 12: cpu=00:04:49, mem=203.43895 GBs, > io=0.01394, vmem=3.665G, maxvmem=3.665G > > > usage 13: cpu=00:04:45, mem=196.67175 GBs, > io=0.01394, vmem=3.663G, maxvmem=3.663G > > > usage 14: cpu=00:04:24, mem=185.68047 GBs, > io=0.01400, vmem=3.648G, maxvmem=3.648G > > > usage 15: cpu=00:04:40, mem=195.96253 GBs, > io=0.01394, vmem=3.656G, maxvmem=3.656G > > > usage 16: cpu=00:04:11, mem=179.84016 GBs, > io=0.01394, vmem=3.633G, maxvmem=3.633G > > > usage 17: cpu=00:04:43, mem=196.21689 GBs, > io=0.01394, vmem=3.662G, maxvmem=3.662G > > > usage 18: cpu=00:04:37, mem=197.39875 GBs, > io=0.01394, vmem=3.653G, maxvmem=3.653G > > > usage 19: cpu=00:04:35, mem=191.55982 GBs, > io=0.01394, vmem=3.653G, maxvmem=3.653G > > > usage 20: cpu=00:04:26, mem=191.62928 GBs, > io=0.01394, vmem=3.643G, maxvmem=3.643G > > > usage 21: cpu=00:04:42, mem=197.87398 GBs, > io=0.01394, vmem=3.660G, maxvmem=3.660G > > > usage 22: cpu=00:04:36, mem=193.43107 GBs, > io=0.01394, vmem=3.652G, maxvmem=3.652G > > > usage 23: cpu=00:04:32, mem=193.12103 GBs, > io=0.01394, vmem=3.652G, maxvmem=3.652G > > > usage 24: cpu=00:04:25, mem=186.56485 GBs, > io=0.01400, vmem=3.644G, maxvmem=3.644G > > > usage 25: cpu=00:04:51, mem=201.81706 GBs, > io=0.01400, vmem=3.669G, maxvmem=3.669G > > > scheduling info: queue instance "main.q@camilla" dropped > because it is full > > > queue instance "main.q@node0" dropped > because it is full > > > All queues dropped because of overload or > full > > > not all array task may be started due to > 'max_aj_instances' > > > > The machine is just full. > > > > -- Reuti > > > > > > > You guys know how this can be solved? > > > > > > > > > > > > 2012/11/13 Reuti <[email protected]> > > > Am 13.11.2012 um 13:42 schrieb jan roels: > > > > > > > Hi, > > > > > > > > I followed the following tutorial: > > > > > > > > > http://verahill.blogspot.be/2012/06/setting-up-sun-grid-engine-with-three.htmlon > how to install the SGE. It all went fine on my masternode but on my exec > node i have some troubles. > > > > > > > > First it gave the following error: > > > > > > > > 11/13/2012 13:44:43| main|node0|E|communication error for > "node0/execd/1" running on port 6445: "can't bind socket" > > > > > > Is there already something running on this port - any older version of > the execd? > > > > > > > > > > 11/13/2012 13:44:44| main|node0|E|commlib error: can't bind socket > (no additional information available) > > > > 11/13/2012 13:45:12| main|node0|C|abort qmaster registration due to > communication errors > > > > 11/13/2012 13:45:14| main|node0|W|daemonize error: child exited > before sending daemonize state > > > > > > > > but then i killed the proces and restarted the gridengine-execd but > then i get the following: > > > > > > > > /etc/init.d/gridengine-exec restart > > > > * Restarting Sun Grid Engine Execution Daemon sge_execd > error: can't resolve host name > > > > error: can't get configuration from qmaster -- backgrounding > > > > > > > > What can i do to fix this? > > > > > > Any firewall on the machines? Ports 6444 and 6445 need to be excluded. > > > > > > -- Reuti > > > > > > > _______________________________________________ > > > > users mailing list > > > > [email protected] > > > > https://gridengine.org/mailman/listinfo/users > > > > > > > > > > > > > >
_______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
