Hi, Am 31.10.2013 um 15:38 schrieb Sylvain Foisy Ph. D.:
> I sent a whole bunch of next gen sequencing alignment jobs on our cluster > that completed just fine on the slaves but my qmaster process dies along the > way and I had to restart it. Following this, I tried to submit sleeper.sh > test jobs to check if everytinng was fine but they get stuck in the queue in > qw state, never being submitted for execution. When I look into the qmaster > log file, I see this message a number of times (I guess that each time the > master tries to submit): > > rule "default rule (spool dir)" in spooling context "flatfile spooling" > failed writing an object > > Ok, I did my googling on this and found out that the problem is lack of space > for spooling into the $SGE_ROOT folder. All good and fine but my df > inspection shows me that my $SGE_ROOT is only at 90% free... The spool directory is at the location you specified during installation. So all the flat files are in $SGE_ROOT/default/spool/qmaster? This location is writable too? -- Reuti > Before I go and restart the master server, is there anything that I should be > looking for? > > Best regards and thanks in advance > > Sylvain > > ============================================================== > Sylvain Foisy, Ph. D. > Chargé de projet | Project Manager > Bioinformatics > Labo. de génétique et médecine génomique de l'inflammation > Centre de recherche > Institut de cardiologie de Montréal > 5000 Bélanger Est > Montréal, Qc H1T 1C8 > CANADA > ============================================================== > > _______________________________________________ > users mailing list > [email protected] > https://gridengine.org/mailman/listinfo/users _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
