Hi Reuti, On 2013-10-31, at 1:25 PM, Reuti wrote:
>> I sent a whole bunch of next gen sequencing alignment jobs on our cluster >> that completed just fine on the slaves but my qmaster process dies along the >> way and I had to restart it. Following this, I tried to submit sleeper.sh >> test jobs to check if everytinng was fine but they get stuck in the queue in >> qw state, never being submitted for execution. When I look into the qmaster >> log file, I see this message a number of times (I guess that each time the >> master tries to submit): >> >> rule "default rule (spool dir)" in spooling context "flatfile spooling" >> failed writing an object >> >> Ok, I did my googling on this and found out that the problem is lack of >> space for spooling into the $SGE_ROOT folder. All good and fine but my df >> inspection shows me that my $SGE_ROOT is only at 90% free... > > The spool directory is at the location you specified during installation. So > all the flat files are in $SGE_ROOT/default/spool/qmaster? This location is > writable too? Simply looking into that location, everything looks fine... Best regards S _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
