qalter -w p doesn't shows anything, qstat shows 16 processes and not 60:
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node2 1 1
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node12 1 2
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node13 1 3
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node11 1 4
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node11 1 5
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node13 1 6
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node12 1 7
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node2 1 8
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node2 1 9
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node12 1 10
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node13 1 11
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node11 1 12
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node11 1 13
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node13 1 14
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node12 1 15
250 0.50000 OMA cbuach r 12/06/2018 11:04:15
main.q@ubuntu-node2 1 16
250 0.50000 OMA cbuach qw 12/06/2018 11:04:02
1 17-60:1
El jue., 6 dic. 2018 a las 10:59, Reuti (<re...@staff.uni-marburg.de>)
escribió:
>
> > Am 06.12.2018 um 09:47 schrieb Hay, William <w....@ucl.ac.uk>:
> >
> > On Wed, Dec 05, 2018 at 03:29:23PM -0300, Dimar Jaime Gonz??lez Soto
> wrote:
> >> the app site is https://omabrowser.org/standalone/ I tried to make a
> >> parallel environment but it didn't work.
> > The website indicates that an array job should work for this.
> > Has the load average spiked to the point where np_load_avg>=1.75?
>
> Yes, I noticed this too. Hence we need no parallel environement at all, as
> OMA will just start several serial jobs as long as slots are available
> AFAICS.
>
> What does `qstat` show for a running job. There should be a line for each
> executing task while the waiting once are abbreviated in one line.
>
> -- Reuti
>
>
> >
> > I would try running qalter -w p against the job id to see what it says.
> >
> > William
> >
> >
> >
> >>
> >>> Am 05.12.2018 um 19:10 schrieb Dimar Jaime Gonzalez Soto
> >> <dimar.gonzalez.s...@gmail.com>:
> >>>
> >>> Hi everyone I'm trying to run OMA standalone on a grid engine setup
> >> with this line:
> >>>
> >>> qsub -v NR_PROCESSES=60 -b y -j y -t 1-60 -cwd /usr/local/OMA/bin/OMA
> >>>
> >>> it works but only execute 4 processes per node, there are 4 nodes
> >> with 16 logical threads. My main.q configuration is:
> >>>
> >>> qname main.q
> >>> hostlist @allhosts
> >>> seq_no 0
> >>> load_thresholds np_load_avg=1.75
> >>> suspend_thresholds NONE
> >>> nsuspend 1
> >>> suspend_interval 00:05:00
> >>> priority 0
> >>> min_cpu_interval 00:05:00
> >>> processors UNDIFINED
> >>> qtype BATCH INTERACTIVE
> >>> ckpt_list NONE
> >>> pe_list make
> >>> rerun FALSE
> >>> slots 16
>
>
--
Atte.
Dimar González Soto
Ingeniero Civil en Informática
Universidad Austral de Chile
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