> Am 06.12.2018 um 15:07 schrieb Dimar Jaime González Soto > <dimar.gonzalez.s...@gmail.com>: > > qalter -w p doesn't shows anything, qstat shows 16 processes and not 60: > > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node2 1 1 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node12 1 2 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node13 1 3 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node11 1 4 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node11 1 5 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node13 1 6 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node12 1 7 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node2 1 8 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node2 1 9 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node12 1 10 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node13 1 11 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node11 1 12 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node11 1 13 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node13 1 14 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node12 1 15 > 250 0.50000 OMA cbuach r 12/06/2018 11:04:15 > main.q@ubuntu-node2 1 16 > 250 0.50000 OMA cbuach qw 12/06/2018 11:04:02 > 1 17-60:1
Aha, so they are running already on remote nodes – fine. As the setting in the queue configuration is per host, this should work and provide more processes per node instead of four. Is there a setting for the exechosts: qconf -se ubuntu-node2 limiting the slots to 4 in complex_values? Can you please also provide the `qhost` output. -- Reuti > > El jue., 6 dic. 2018 a las 10:59, Reuti (<re...@staff.uni-marburg.de>) > escribió: > > > Am 06.12.2018 um 09:47 schrieb Hay, William <w....@ucl.ac.uk>: > > > > On Wed, Dec 05, 2018 at 03:29:23PM -0300, Dimar Jaime Gonz??lez Soto wrote: > >> the app site is https://omabrowser.org/standalone/ I tried to make a > >> parallel environment but it didn't work. > > The website indicates that an array job should work for this. > > Has the load average spiked to the point where np_load_avg>=1.75? > > Yes, I noticed this too. Hence we need no parallel environement at all, as > OMA will just start several serial jobs as long as slots are available AFAICS. > > What does `qstat` show for a running job. There should be a line for each > executing task while the waiting once are abbreviated in one line. > > -- Reuti > > > > > > I would try running qalter -w p against the job id to see what it says. > > > > William > > > > > > > >> > >>> Am 05.12.2018 um 19:10 schrieb Dimar Jaime Gonzalez Soto > >> <dimar.gonzalez.s...@gmail.com>: > >>> > >>> Hi everyone I'm trying to run OMA standalone on a grid engine setup > >> with this line: > >>> > >>> qsub -v NR_PROCESSES=60 -b y -j y -t 1-60 -cwd /usr/local/OMA/bin/OMA > >>> > >>> it works but only execute 4 processes per node, there are 4 nodes > >> with 16 logical threads. My main.q configuration is: > >>> > >>> qname main.q > >>> hostlist @allhosts > >>> seq_no 0 > >>> load_thresholds np_load_avg=1.75 > >>> suspend_thresholds NONE > >>> nsuspend 1 > >>> suspend_interval 00:05:00 > >>> priority 0 > >>> min_cpu_interval 00:05:00 > >>> processors UNDIFINED > >>> qtype BATCH INTERACTIVE > >>> ckpt_list NONE > >>> pe_list make > >>> rerun FALSE > >>> slots 16 > > > > -- > Atte. > > Dimar González Soto > Ingeniero Civil en Informática > Universidad Austral de Chile > >
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