On Sat, 2 Sep 2017 08:20:19 +0200, Florian Sievert wrote:

> I might have a closer look today if I find any reason causing this
> extremly strange behaviour I never run into before as IMHO might be
> rooted in some hardware failure.

Do some more trouble-shooting. Pick one package that conflicts, e.g. glibc.
Query the local RPM database and show which version and architecturs of
that package are installed. Then query the repositories and show which
versions and archs of that package are available. x86_64 and i686 builds
are published at the same time, so in the repo you should find matching
builds of glibc with exactly the same EVR. Once you've confirmed that,
examine your DNF configuration. Verify the repositories you've enabled.
Don't add an extra repo for i686. The x86_64 repo includes the i686
multilib packages already. Have you protected some packages/repos
or excluded packages/archs maybe? 
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