How about the output of this? /opt/openmpi/intel/bin/mpif90 -showme
Anyway, something seems to be wrong with your OpenMPI installation. Just read the output of your ompi_info in your email below. You will see that the OpenMPI version is 1.4.4. However, most components are version 1.4.2. Do you agree? I would download the OpenMPI 1.4.4 tarball again and start fresh. Untar the tarball in a brand new directory, don't overwrite old stuff. Also, every time your OpenMPI build fails, or if you want to change compilers [say from gfortran to ifort], do a 'make distclean' to cleanup any leftovers of previous builds, and change the destination directory in --prefix= , to install in a different location. I hope this helps, Gus Correa On Dec 14, 2011, at 12:21 PM, Micah Sklut wrote: > Hi Gustav, > > I did read Price's email: > > When I do "which mpif90", i get: > /opt/openmpi/intel/bin/mpif90 > which is the desired directory/binary > > As I mentioned, the config log file indicated it was using ifort, and had no > mention of gfortran. > Below is the output from ompi_info. It shows reference to the correct ifort > compiler. But, yet the mpif90 compiler, still yeilds a gfortran compiler. > --> > barells@ip-10-17-153-123:~> ompi_info > Package: Open MPI barells@ip-10-17-148-204 Distribution > Open MPI: 1.4.4 > Open MPI SVN revision: r25188 > Open MPI release date: Sep 27, 2011 > Open RTE: 1.4.4 > Open RTE SVN revision: r25188 > Open RTE release date: Sep 27, 2011 > OPAL: 1.4.4 > OPAL SVN revision: r25188 > OPAL release date: Sep 27, 2011 > Ident string: 1.4.4 > Prefix: /usr/lib64/mpi/gcc/openmpi > Configured architecture: x86_64-unknown-linux-gnu > Configure host: ip-10-17-148-204 > Configured by: barells > Configured on: Wed Dec 14 14:22:43 UTC 2011 > Configure host: ip-10-17-148-204 > Built by: barells > Built on: Wed Dec 14 14:27:56 UTC 2011 > Built host: ip-10-17-148-204 > C bindings: yes > C++ bindings: yes > Fortran77 bindings: yes (all) > Fortran90 bindings: yes > Fortran90 bindings size: small > C compiler: gcc > C compiler absolute: /usr/bin/gcc > C++ compiler: g++ > C++ compiler absolute: /usr/bin/g++ > Fortran77 compiler: ifort > Fortran77 compiler abs: /opt/intel/fce/9.1.040/bin/ifort > Fortran90 compiler: ifort > Fortran90 compiler abs: /opt/intel/fce/9.1.040/bin/ifort > C profiling: yes > C++ profiling: yes > Fortran77 profiling: yes > Fortran90 profiling: yes > C++ exceptions: no > Thread support: posix (mpi: no, progress: no) > Sparse Groups: no > Internal debug support: no > MPI parameter check: runtime > Memory profiling support: no > Memory debugging support: no > libltdl support: yes > Heterogeneous support: no > mpirun default --prefix: no > MPI I/O support: yes > MPI_WTIME support: gettimeofday > Symbol visibility support: yes > FT Checkpoint support: no (checkpoint thread: no) > MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.4.2) > MCA memory: ptmalloc2 (MCA v2.0, API v2.0, Component v1.4.2) > MCA paffinity: linux (MCA v2.0, API v2.0, Component v1.4.2) > MCA carto: auto_detect (MCA v2.0, API v2.0, Component v1.4.2) > MCA carto: file (MCA v2.0, API v2.0, Component v1.4.2) > MCA maffinity: first_use (MCA v2.0, API v2.0, Component v1.4.2) > MCA timer: linux (MCA v2.0, API v2.0, Component v1.4.2) > MCA installdirs: env (MCA v2.0, API v2.0, Component v1.4.2) > MCA installdirs: config (MCA v2.0, API v2.0, Component v1.4.2) > MCA dpm: orte (MCA v2.0, API v2.0, Component v1.4.2) > MCA pubsub: orte (MCA v2.0, API v2.0, Component v1.4.2) > MCA allocator: basic (MCA v2.0, API v2.0, Component v1.4.2) > MCA allocator: bucket (MCA v2.0, API v2.0, Component v1.4.2) > MCA coll: basic (MCA v2.0, API v2.0, Component v1.4.2) > MCA coll: hierarch (MCA v2.0, API v2.0, Component v1.4.2) > MCA coll: inter (MCA v2.0, API v2.0, Component v1.4.2) > MCA coll: self (MCA v2.0, API v2.0, Component v1.4.2) > MCA coll: sm (MCA v2.0, API v2.0, Component v1.4.2) > MCA coll: sync (MCA v2.0, API v2.0, Component v1.4.2) > MCA coll: tuned (MCA v2.0, API v2.0, Component v1.4.2) > MCA io: romio (MCA v2.0, API v2.0, Component v1.4.2) > MCA mpool: fake (MCA v2.0, API v2.0, Component v1.4.2) > MCA mpool: rdma (MCA v2.0, API v2.0, Component v1.4.2) > MCA mpool: sm (MCA v2.0, API v2.0, Component v1.4.2) > MCA pml: cm (MCA v2.0, API v2.0, Component v1.4.2) > MCA pml: csum (MCA v2.0, API v2.0, Component v1.4.2) > MCA pml: ob1 (MCA v2.0, API v2.0, Component v1.4.2) > MCA pml: v (MCA v2.0, API v2.0, Component v1.4.2) > MCA bml: r2 (MCA v2.0, API v2.0, Component v1.4.2) > MCA rcache: vma (MCA v2.0, API v2.0, Component v1.4.2) > MCA btl: ofud (MCA v2.0, API v2.0, Component v1.4.2) > MCA btl: openib (MCA v2.0, API v2.0, Component v1.4.2) > MCA btl: self (MCA v2.0, API v2.0, Component v1.4.2) > MCA btl: sm (MCA v2.0, API v2.0, Component v1.4.2) > MCA btl: tcp (MCA v2.0, API v2.0, Component v1.4.2) > MCA btl: udapl (MCA v2.0, API v2.0, Component v1.4.2) > MCA topo: unity (MCA v2.0, API v2.0, Component v1.4.2) > MCA osc: pt2pt (MCA v2.0, API v2.0, Component v1.4.2) > MCA osc: rdma (MCA v2.0, API v2.0, Component v1.4.2) > MCA iof: hnp (MCA v2.0, API v2.0, Component v1.4.2) > MCA iof: orted (MCA v2.0, API v2.0, Component v1.4.2) > MCA iof: tool (MCA v2.0, API v2.0, Component v1.4.2) > MCA oob: tcp (MCA v2.0, API v2.0, Component v1.4.2) > MCA odls: default (MCA v2.0, API v2.0, Component v1.4.2) > MCA ras: slurm (MCA v2.0, API v2.0, Component v1.4.2) > MCA rmaps: load_balance (MCA v2.0, API v2.0, Component v1.4.2) > MCA rmaps: rank_file (MCA v2.0, API v2.0, Component v1.4.2) > MCA rmaps: round_robin (MCA v2.0, API v2.0, Component v1.4.2) > MCA rmaps: seq (MCA v2.0, API v2.0, Component v1.4.2) > MCA rml: oob (MCA v2.0, API v2.0, Component v1.4.2) > MCA routed: binomial (MCA v2.0, API v2.0, Component v1.4.2) > MCA routed: direct (MCA v2.0, API v2.0, Component v1.4.2) > MCA routed: linear (MCA v2.0, API v2.0, Component v1.4.2) > MCA plm: rsh (MCA v2.0, API v2.0, Component v1.4.2) > MCA plm: slurm (MCA v2.0, API v2.0, Component v1.4.2) > MCA filem: rsh (MCA v2.0, API v2.0, Component v1.4.2) > MCA errmgr: default (MCA v2.0, API v2.0, Component v1.4.2) > MCA ess: env (MCA v2.0, API v2.0, Component v1.4.2) > MCA ess: hnp (MCA v2.0, API v2.0, Component v1.4.2) > MCA ess: singleton (MCA v2.0, API v2.0, Component v1.4.2) > MCA ess: slurm (MCA v2.0, API v2.0, Component v1.4.2) > MCA ess: tool (MCA v2.0, API v2.0, Component v1.4.2) > MCA grpcomm: bad (MCA v2.0, API v2.0, Component v1.4.2) > MCA grpcomm: basic (MCA v2.0, API v2.0, Component v1.4.2) > > > > > On Wed, Dec 14, 2011 at 12:11 PM, Gustavo Correa <g...@ldeo.columbia.edu> > wrote: > Hi Micah > > Did you read Tim Prince's email to you? Check it out. > > Best thing is to set your environment variables [PATH, LD_LIBRARY_PATH, intel > setup] > in your initialization file, .profile/.bashrc or .[t]cshrc. > > What is the output of 'ompi_info'? [From your ifort-built OpenMPI.] > Does it show ifort or gfortran? > > I hope this helps, > Gus Correa > > On Dec 14, 2011, at 11:21 AM, Micah Sklut wrote: > > > Thanks for your thoughts, > > > > It would certainly appear that it is a PATH issue, but I still haven't > > figured it out. > > > > When I type the ifort command, ifort does run. > > The intel path is in my PATH and is the first directory listed. > > > > Looking at the configure.log, there is nothing indicating use or mentioning > > of "gfortran". > > > > gfortran is in the /usr/bin directory, which is in the PATH as well. > > > > Any other suggestions of things to look for? > > > > Thank you, > > > > On Wed, Dec 14, 2011 at 11:05 AM, Gustavo Correa <g...@ldeo.columbia.edu> > > wrote: > > Hi Micah > > > > Is ifort in your PATH? > > If not, the OpenMPI configure script will use any fortran compiler it finds > > first, which may be gfortran. > > You need to run the Intel compiler startup script before you run the > > OpenMPI configure. > > The easy thing to do is to source the Intel script inside your > > .profile/.bashrc or .[t]cshrc file. > > I hope this helps, > > > > Gus Correa > > > > On Dec 14, 2011, at 9:49 AM, Micah Sklut wrote: > > > > > Hi All, > > > > > > I have installed openmpi for gfortran, but am now attempting to install > > > openmpi as ifort. > > > > > > I have run the following configuration: > > > ./configure --prefix=/opt/openmpi/intel CC=gcc CXX=g++ F77=ifort FC=ifort > > > > > > The install works successfully, but when I run > > > /opt/openmpi/intel/bin/mpif90, it runs as gfortran. > > > Oddly, when I am user: root, the same mpif90 runs as ifort. > > > > > > Can someone please alleviate my confusion as to why I mpif90 is not > > > running as ifort? > > > > > > Thank you for your suggestions, > > > > > > -- > > > Micah > > > > > > > > > _______________________________________________ > > > users mailing list > > > us...@open-mpi.org > > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > > > > -- > > Micah Sklut > > > > > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > -- > Micah Sklut > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
