On Tue, 3 Jan 2012, Richard Walsh wrote:

OPAL has problems with the default optimization. See this thread on one of the Intel lists.

vi opal/mca/memory/linux/malloc.c
add #pragma optimize("", off)

http://software.intel.com/en-us/forums/showthread.php?t=87132


Gus/All,

Perhaps there is some confusion as to which 'new' Intel compiler 
release/version I
am using. I am not using '12.0'  ... I am using '12.1' ...

OLD one that builds a working opal_wrapper:

[richard.walsh@athena ~]$ icc -V
Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64, 
Version 12.0.0.084 Build 20101006
Copyright (C) 1985-2010 Intel Corporation.  All rights reserved.                
             ^^^^^^^^^

NEW one that FAILS to build a working opal_wrapper:

[root@zeus .libs]# icc -V
Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64, 
Version 12.1.0.233 Build 20110811
Copyright (C) 1985-2011 Intel Corporation.  All rights reserved.                
             ^^^^^^^^^

This was in my original email.  NOTE: that the non-working version is 12.1  
>>NOT<< 12.0  This '12.1'
version was released by Intel JUST BEFORE SC11 in October of 2011.

Thanks,

rbw


Richard Walsh
Parallel Applications and Systems Manager
CUNY HPC Center, Staten Island, NY
W: 718-982-3319
M: 612-382-4620

Right, as the world goes, is only in question between equals in power, while 
the strong do what they can and the weak suffer what they must.  -- Thucydides, 
400 BC

________________________________________
From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of 
Gustavo Correa [g...@ldeo.columbia.edu]
Sent: Tuesday, January 03, 2012 4:28 PM
To: Open MPI Users
Subject: Re: [OMPI users] Latest Intel Compilers (ICS,  version 12.1.0.233 
Build 20110811) issues ...

Hi Richard

I have 1.4.4 built with Intel 12.0.  It works.

Any chance that  your Intel-based OpenMPI was built from a source
directory that had been previously used to build the PGI-based OpenMPI,
and no 'make distclean' was issued in between the two builds,
nor a fresh build done from a brand new tarball?
Just a wild guess.

I hope it helps,
Gus Correa

On Jan 3, 2012, at 11:23 AM, Richard Walsh wrote:


Jonathan/All,

Thanks for the information, but I continue to have problems.  I dropped the
'openib' option to simplify things and focused my attention only on OpenMPI
version 1.4.4 because you suggested it works.

On the strength of the fact that the PGI 11.10 compiler works fine (all systems
and all versions of OpenMPI), I ran a PGI build of 1.4.4 with the '-showme'
option (Intel fails immediately, even with '-showme' ... ).  I then substituted 
all
the PGI-related strings with Intel-related strings to compile directly and 
explicitly
outside the 'opal' wrapper using code and libraries in the Intel build tree of 
1.4.4,
as follows:

pgcc -o ./hw2.exe hw2.c -I/share/apps/openmpi-pgi/1.4.4/include 
-L/share/apps/openmpi-pgi/1.4.4/lib -lmpi -lopen-rte -lopen-pal -ldl 
-Wl,--export-dynamic -lnsl -lutil -ldl

becomes ...

icc -o ./hw2.exe hw2.c -I/share/apps/openmpi-intel/1.4.4/include 
-L/share/apps/openmpi-intel/1.4.4/lib -lmpi -lopen-rte -lopen-pal -ldl 
-Wl,--export-dynamic -lnsl -lutil -ldl

Interestingly, this direct-explicit Intel compile >>WORKS FINE<< (no segment 
fault like with the wrapped version)
and the executable produced also >>RUNS FINE<<.  So ... it looks to me like 
there is something wrong with using
the 'opal' wrappper generated-used in the Intel build.

Can someone make a suggestion ... ?? I would like to use the wrappers of course.

Thanks,

rbw

Richard Walsh
Parallel Applications and Systems Manager
CUNY HPC Center, Staten Island, NY
W: 718-982-3319
M: 612-382-4620

Right, as the world goes, is only in question between equals in power, while 
the strong do what they can and the weak suffer what they must.  -- Thucydides, 
400 BC

________________________________________
From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of 
Jonathan Dursi [ljdu...@scinet.utoronto.ca]
Sent: Tuesday, December 20, 2011 4:48 PM
To: Open Users
Subject: Re: [OMPI users] Latest Intel Compilers (ICS,  version 12.1.0.233 
Build 20110811) issues ...

For what it's worth, 1.4.4 built with the intel 12.1.0.233 compilers has been  
the default mpi at our centre for over a month and we haven't had any 
problems...

  - jonathan
--
Jonathan Dursi; SciNet, Compute/Calcul Canada

-----Original Message-----
From: Richard Walsh <richard.wa...@csi.cuny.edu>
Sender: users-boun...@open-mpi.org
Date: Tue, 20 Dec 2011 21:14:44
To: Open MPI Users<us...@open-mpi.org>
Reply-To: Open MPI Users <us...@open-mpi.org>
Subject: Re: [OMPI users] Latest Intel Compilers (ICS,
version 12.1.0.233 Build 20110811) issues ...


All,

I have not heard anything back on the inquiry below, so I take it
that no one has had any issues with Intel's latest compiler release,
or perhaps has not tried it yet.

Thanks,

rbw

Richard Walsh
Parallel Applications and Systems Manager
CUNY HPC Center, Staten Island, NY
W: 718-982-3319
M: 612-382-4620

Right, as the world goes, is only in question between equals in power, while 
the strong do what they can and the weak suffer what they must.  -- Thucydides, 
400 BC

________________________________________
From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of 
Richard Walsh [richard.wa...@csi.cuny.edu]
Sent: Friday, December 16, 2011 3:12 PM
To: Open MPI Users
Subject: [OMPI users] Latest Intel Compilers (ICS, version 12.1.0.233 Build 
20110811) issues ...

All,

Working through a stock rebuild of OpenMPI 1.5.4 and 1.4.4 with
the most current compiler suites from both PGI and Intel:

  1.  PGI,  Version 11.10

  2.  Intel,  Version 12.1.0.233 Build 20110811

My 1.5.4 'config.log' header looks like this for Intel:

./configure CC=icc CXX=icpc F77=ifort FC=ifort --with-openib 
--prefix=/share/apps/openmpi-intel/1.5.4 --with-tm=/share/apps/pbs/11.1.0.111761

and this for PGI:

./configure CC=pgcc CXX=pgCC F77=pgf77 FC=pgf90 --with-openib 
--prefix=/share/apps/openmpi-pgi/1.5.4 --with-tm=/share/apps/pbs/11.1.0.111761

This configure line has been used successfully before.  Configuration, build, 
and install
for BOTH compilers seems to work OK; however, my 'mpicc' build of my basic test
program ONLY works with the PGI built version of 'mpicc' for either the 1.4.4 
or the 1.5.4
will compile the code.

The Intel 1.4.4 and 1.5.4 'mpicc' wrapper-compilers produce an immediate 
segmentation
fault:

.[richard.walsh@bob pbs]$ ./compile_it
./compile_it: line 10: 19163 Segmentation fault      
/share/apps/openmpi-intel/1.5.4/bin/mpicc -o ./hello_mpi.exe hello_mpi.c
[richard.walsh@bob pbs]$
[richard.walsh@bob pbs]$ ./compile_it
./compile_it: line 10: 19515 Segmentation fault      
/share/apps/openmpi-intel/1.4.4/bin/mpicc -o ./hello_mpi.exe hello_mpi.c

This Intel stack is from the most recent release of their ICS released
in late October before SC11:

[richard.walsh@bob pbs]$ icc -V
Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64, 
Version 12.1.0.233 Build 20110811
Copyright (C) 1985-2011 Intel Corporation.  All rights reserved.

[richard.walsh@bob pbs]$ ifort -V
Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 
64, Version 12.1.0.233 Build 20110811
Copyright (C) 1985-2011 Intel Corporation.  All rights reserved.

Has anyone else encountered this problem ... ??  Suggestions ... ??

Thanks,

rbw


Richard Walsh
Parallel Applications and Systems Manager
CUNY HPC Center, Staten Island, NY
W: 718-982-3319
M: 612-382-4620

Right, as the world goes, is only in question between equals in power, while 
the strong do what they can and the weak suffer what they must.  -- Thucydides, 
400 BC


________________________________

Change is in the Air - Smoking in Designated Areas Only in 
effect.<http://www.csi.cuny.edu/tobaccofree>
Tobacco-Free Campus as of July 1, 2012.

_______________________________________________
users mailing list
us...@open-mpi.org
http://www.open-mpi.org/mailman/listinfo.cgi/users

________________________________

Change is in the Air - Smoking in Designated Areas Only in 
effect.<http://www.csi.cuny.edu/tobaccofree>
Tobacco-Free Campus as of July 1, 2012.

_______________________________________________
users mailing list
us...@open-mpi.org
http://www.open-mpi.org/mailman/listinfo.cgi/users

_______________________________________________
users mailing list
us...@open-mpi.org
http://www.open-mpi.org/mailman/listinfo.cgi/users

________________________________

Change is in the Air - Smoking in Designated Areas Only in 
effect.<http://www.csi.cuny.edu/tobaccofree>
Tobacco-Free Campus as of July 1, 2012.

_______________________________________________
users mailing list
us...@open-mpi.org
http://www.open-mpi.org/mailman/listinfo.cgi/users


_______________________________________________
users mailing list
us...@open-mpi.org
http://www.open-mpi.org/mailman/listinfo.cgi/users

________________________________

Change is in the Air - Smoking in Designated Areas Only in 
effect.<http://www.csi.cuny.edu/tobaccofree>
Tobacco-Free Campus as of July 1, 2012.

_______________________________________________
users mailing list
us...@open-mpi.org
http://www.open-mpi.org/mailman/listinfo.cgi/users


--
-------------------------------------------
Tim Carlson, PhD
Senior Research Scientist
Environmental Molecular Sciences Laboratory

Reply via email to