Good morning, I'm trying to build OpenMPI with the Intel 14.01 compilers with the following configure line ./configure --prefix=/opt/openmpi-1.8.3/intel-14.01 CC=icc CXX=icpc FC=ifort On a 6-core 3.5 GHz Intel Xeon E5 Mac Pro running Mac OS X 10.9.5.
Configure outputs a pthread error, complaining that different threads don't have the same PID. I also get the same error with OpenMPI 1.8.2 and the Intel compilers. I was able to build OpenMPI 1.8.3 with both LLVM 5.1 and GCC 4.9 so something is going wrong with the Intel compilers threading interface. Interestingly, OpenMPI 1.8.3 and the Intel 14.01 compilers work fine on my Macbook pro : same OS, different CPU (2.8 Ghz Intel Core i7), same configure line. Is there an environment variable or configure option that I need to set to avoid this error on the Mac Pro? Thanks for your help. Pete Bosler P.S. The specific warnings and error from openmpi-1.8.3/configure are the following (and the whole output file is attached): ... Lots of output ... configure: WARNING: ulimit.h: present but cannot be compiled configure: WARNING: ulimit.h: check for missing prerequisite headers? configure: WARNING: ulimit.h: see the Autoconf documentation configure: WARNING: ulimit.h: section "Present But Cannot Be Compiled" configure: WARNING: ulimit.h: proceeding with the compiler's result configure: WARNING: ## ------------------------------------------------------ ## configure: WARNING: ## Report this to http://www.open-mpi.org/community/help/ ## configure: WARNING: ## ------------------------------------------------------ ## ... Lots more output ... checking if threads have different pids (pthreads on linux)... yes configure: WARNING: This version of Open MPI only supports environments where configure: WARNING: threads have the same PID. Please use an older version of configure: WARNING: Open MPI if you need support on systems with different configure: WARNING: PIDs for threads in the same process. Open MPI 1.4.x configure: WARNING: supports such systems, as does at least some versions the configure: WARNING: Open MPI 1.5.x series. configure: error: Cannot continue
============================================================================ == Configuring Open MPI ============================================================================ *** Startup tests checking build system type... x86_64-apple-darwin13.4.0 checking host system type... x86_64-apple-darwin13.4.0 checking target system type... x86_64-apple-darwin13.4.0 checking for gcc... icc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether icc accepts -g... yes checking for icc option to accept ISO C89... none needed checking how to run the C preprocessor... icc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... config/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking how to create a ustar tar archive... none checking dependency style of icc... gcc3 checking whether make supports nested variables... yes *** Checking versions checking Open MPI version... 1.8.3 checking Open MPI release date... Sep 25, 2014 checking Open MPI Subversion repository version... r32794 checking Open MPI Run-Time Environment version... 1.8.3 checking Open MPI Run-Time Environment release date... Sep 25, 2014 checking Open MPI Run-Time Environment Subversion repository version... r32794 checking Open SHMEM version... 1.8.3 checking Open SHMEM release date... Sep 25, 2014 checking Open SHMEM Subversion repository version... r32794 checking Open Portable Access Layer version... 1.8.3 checking Open Portable Access Layer release date... Sep 25, 2014 checking Open Portable Access Layer Subversion repository version... r32794 checking for bootstrap Autoconf version... 2.69 checking for bootstrap Automake version... 1.12 checking for boostrap Libtool version... 2.4.2 *** Initialization, setup configure: builddir: /Users/pabosle/sourceCodes/openmpi-1.8.3 configure: srcdir: /Users/pabosle/sourceCodes/openmpi-1.8.3 installing to directory "/opt/openmpi-1.8.3/intel-14.01" *** OPAL Configuration options checking if want to run code coverage... no checking if want to compile with branch probabilities... no checking if want to debug memory usage... no checking if want to profile memory usage... no checking if want developer-level compiler pickyness... no checking if want developer-level debugging code... no checking if want to install project-internal header files... no checking if want pretty-print stacktrace... yes checking if want pty support... yes checking if want weak symbol support... yes checking if want dlopen support... yes checking if want heterogeneous support... no checking if want IPv6 support... no checking if want package/brand string... Open MPI pabo...@s979598.srn.sandia.gov Distribution checking if want ident string... 1.8.3 checking if want to use an alternative checksum algo for messages... no checking maximum length of processor name... 256 checking maximum length of error string... 256 checking maximum length of object name... 64 checking maximum length of info key... 36 checking maximum length of info val... 256 checking maximum length of port name... 1024 checking maximum length of datarep string... 128 checking if want getpwuid support... yes checking __NetBSD__... no checking __FreeBSD__... no checking __OpenBSD__... no checking __DragonFly__... no checking __386BSD__... no checking __bsdi__... no checking __APPLE__... yes checking __linux__... no checking __sun__... no checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking for struct sockaddr_in... yes checking if --with-cuda is set... not set (--with-cuda=) checking for struct CUipcMemHandle_st.reserved... no checking whether CU_POINTER_ATTRIBUTE_SYNC_MEMOPS is declared... no checking if have cuda support... no *** ORTE Configuration options checking if want full RTE support... yes checking if want orterun "--prefix" behavior to be enabled by default... no checking if want sensors... no checking if want orte static ports... yes *** OMPI Configuration options checking if want compile-time warnings inside of mpi.h... yes checking if want sparse process groups... no checking if want peruse support... no checking if want Fortran MPI bindings... yes (all/default) checking if want PMPI... yes checking if want C++ bindings... yes checking if want MPI::SEEK_SET support... yes checking if want run-time MPI parameter checking... runtime checking which 'use mpi_f08' implementation to use... regular (no subarray support) *** OSHMEM Configuration options checking if want oshmem... not supported on this platform checking if want SGI/Quadrics compatibility mode... no checking if want OSHMEM API parameter checking... no checking if want pshmem... yes checking if want to build OSHMEM fortran bindings... no checking if want wrapper compiler rpath support... yes ============================================================================ == Compiler and preprocessor tests ============================================================================ *** C compiler and preprocessor checking for gcc... (cached) icc checking whether we are using the GNU C compiler... (cached) yes checking whether icc accepts -g... (cached) yes checking for icc option to accept ISO C89... (cached) none needed checking whether icc and cc understand -c and -o together... yes checking for icc option to accept ISO C99... -std=gnu99 checking for the C compiler vendor... intel checking for ANSI C header files... (cached) no checking if icc -std=gnu99 supports -finline-functions... yes checking if icc -std=gnu99 supports -fno-strict-aliasing... yes configure: WARNING: -fno-strict-aliasing has been added to CFLAGS checking if icc -std=gnu99 supports -restrict... yes configure: WARNING: -restrict has been added to CFLAGS checking if icc -std=gnu99 supports __builtin_expect... yes checking if icc -std=gnu99 supports __builtin_prefetch... yes checking if icc -std=gnu99 supports __builtin_clz... yes checking for C optimization flags... -O3 -DNDEBUG -finline-functions -fno-strict-aliasing -restrict checking for Interix environment... no checking for C ident string support... #pragma ident checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for int128_t... no checking for uint128_t... no checking for long long... yes checking for __float128... no checking for long double... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for intptr_t... yes checking for uintptr_t... yes checking for mode_t... yes checking for ssize_t... yes checking for ptrdiff_t... no checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking size of void *... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of wchar_t... 4 checking alignment of _Bool... 1 checking alignment of int8_t... 1 checking alignment of int16_t... 2 checking alignment of int32_t... 4 checking alignment of int64_t... 8 checking alignment of char... 1 checking alignment of short... 2 checking alignment of wchar_t... 4 checking alignment of int... 4 checking alignment of long... 8 checking alignment of long long... 8 checking alignment of float... 4 checking alignment of double... 8 checking alignment of long double... 16 checking alignment of float _Complex... 4 checking alignment of double _Complex... 8 checking alignment of long double _Complex... 16 checking alignment of void *... 8 checking alignment of size_t... 8 checking for C bool type... no checking size of _Bool... 1 checking for inline... inline checking for C/C++ restrict keyword... __restrict checking for weak symbol support... no checking for weak symbol support... no checking for functional offsetof macro... yes *** OpenSHMEM profiling checking if pshmem will be enabled... no (OpenSHMEM disabled) *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... yes checking whether icpc accepts -g... yes checking dependency style of icpc... gcc3 checking how to run the C++ preprocessor... icpc -E checking for the C++ compiler vendor... intel checking if icpc supports -finline-functions... yes configure: WARNING: -finline-functions has been added to CXXFLAGS checking if C and C++ are link compatible... yes checking for C++ optimization flags... -O3 -DNDEBUG -finline-functions checking size of bool... 1 checking alignment of bool... 1 *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... (cached) yes checking whether icpc accepts -g... (cached) yes checking dependency style of icpc... (cached) gcc3 checking how to run the C++ preprocessor... icpc -E checking if C++ compiler works... yes checking if icpc supports -finline-functions... yes configure: WARNING: -finline-functions has been added to CXXFLAGS checking if C and C++ are link compatible... (cached) yes checking for C++ optimization flags... -O3 -DNDEBUG -finline-functions checking size of bool... (cached) 1 checking alignment of bool... (cached) 1 checking if able to build the MPI C++ bindings... yes checking for the C++ compiler vendor... (cached) intel checking if want C++ exception handling... no checking for C++ template_repository_directory... not used checking for C++ compiler template parameters... none needed checking for C++ ident string support... #pragma ident checking if icpc supports __builtin_expect... yes checking if icpc supports __builtin_prefetch... yes checking if icpc supports const_cast<> properly... yes *** Compiler characteristics checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(deprecated_argument)... no checking for __attribute__(format)... yes checking for __attribute__(format_funcptr)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(noinline)... yes checking for __attribute__(nonnull)... no checking for __attribute__(noreturn)... yes checking for __attribute__(noreturn_funcptr)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(visibility)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... no checking for __attribute__(destructor)... yes checking for compiler familyid... 2 checking for compiler familyname... INTEL checking for compiler version... 1474728866 checking for compiler version_str... 1400.20131010 *** Java compiler checking OSX locations... found (/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers) checking --with-jdk-bindir value... sanity check ok (/usr/bin) checking --with-jdk-headers value... sanity check ok (/System/Library/Frameworks/JavaVM.framework/Versions/Current/Headers) checking for javac... /usr/bin/javac checking for javah... /usr/bin/javah checking for jar... /usr/bin/jar checking jni.h usability... yes checking jni.h presence... yes checking for jni.h... yes checking Java support available... yes *** Java MPI bindings checking if want Java bindings... no *** Assembler checking dependency style of icc -std=gnu99... gcc3 checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm checking the name lister (/opt/local/bin/nm) interface... BSD nm checking for fgrep... /usr/bin/grep -F checking if need to remove -g from CCASFLAGS... no checking whether to enable smp locks... yes checking if .proc/endp is needed... no checking directive for setting text section... .text checking directive for exporting symbols... .globl checking for objdump... no checking if .note.GNU-stack is needed... no checking suffix for labels... : checking prefix for global symbol labels... _ checking prefix for lsym labels... L checking prefix for function in .type... checking if .size is needed... no checking if .align directive takes logarithmic value... yes checking if icc -std=gnu99 supports GCC inline assembly... yes checking if icc -std=gnu99 supports DEC inline assembly... no checking if icc -std=gnu99 supports XLC inline assembly... no checking for assembly format... default-.text-.globl-:-_-L--0-1-1-1-0 checking for assembly architecture... AMD64 checking for builtin atomics... BUILTIN_NO checking for perl... perl checking for pre-built assembly file... no (not in asm-data) checking whether possible to generate assembly file... yes checking for atomic assembly filename... atomic-local.s *** Fortran compiler checking whether we are using the GNU Fortran compiler... no checking whether ifort accepts -g... yes checking whether ln -s works... yes checking if Fortran compiler works... yes checking for extra arguments to build a shared library... impossible -- -static checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .f90 files... none checking to see if Fortran compilers need additional linker flags... -Wl,-commons,use_dylibs checking external symbol convention... single underscore checking if C and Fortran are link compatible... yes checking to see if Fortran compiler likes the C++ exception flags... skipped (no C++ exceptions flags) checking to see if mpifort compiler needs additional linker flags... -Wl,-commons,use_dylibs checking if Fortran compiler supports CHARACTER... yes checking size of Fortran CHARACTER... 1 checking for C type corresponding to CHARACTER... char checking alignment of Fortran CHARACTER... 1 checking for corresponding KIND value of CHARACTER... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... 1 checking if Fortran compiler supports LOGICAL... yes checking size of Fortran LOGICAL... 4 checking for C type corresponding to LOGICAL... int checking alignment of Fortran LOGICAL... 1 checking for corresponding KIND value of LOGICAL... C_INT checking KIND value of Fortran C_INT... 4 checking if Fortran compiler supports LOGICAL*1... yes checking size of Fortran LOGICAL*1... 1 checking for C type corresponding to LOGICAL*1... char checking alignment of Fortran LOGICAL*1... 1 checking for corresponding KIND value of LOGICAL*1... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1 checking if Fortran compiler supports LOGICAL*2... yes checking size of Fortran LOGICAL*2... 2 checking for C type corresponding to LOGICAL*2... short checking alignment of Fortran LOGICAL*2... 1 checking for corresponding KIND value of LOGICAL*2... C_SHORT checking KIND value of Fortran C_SHORT... 2 checking if Fortran compiler supports LOGICAL*4... yes checking size of Fortran LOGICAL*4... 4 checking for C type corresponding to LOGICAL*4... int checking alignment of Fortran LOGICAL*4... 1 checking for corresponding KIND value of LOGICAL*4... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports LOGICAL*8... yes checking size of Fortran LOGICAL*8... 8 checking for C type corresponding to LOGICAL*8... long long checking alignment of Fortran LOGICAL*8... 1 checking for corresponding KIND value of LOGICAL*8... C_LONG_LONG checking KIND value of Fortran C_LONG_LONG... 8 checking if Fortran compiler supports INTEGER... yes checking size of Fortran INTEGER... 4 checking for C type corresponding to INTEGER... int checking alignment of Fortran INTEGER... 1 checking for corresponding KIND value of INTEGER... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports INTEGER*1... yes checking size of Fortran INTEGER*1... 1 checking for C type corresponding to INTEGER*1... char checking alignment of Fortran INTEGER*1... 1 checking for corresponding KIND value of INTEGER*1... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1 checking if Fortran compiler supports INTEGER*2... yes checking size of Fortran INTEGER*2... 2 checking for C type corresponding to INTEGER*2... short checking alignment of Fortran INTEGER*2... 1 checking for corresponding KIND value of INTEGER*2... C_SHORT checking KIND value of Fortran C_SHORT... (cached) 2 checking if Fortran compiler supports INTEGER*4... yes checking size of Fortran INTEGER*4... 4 checking for C type corresponding to INTEGER*4... int checking alignment of Fortran INTEGER*4... 1 checking for corresponding KIND value of INTEGER*4... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports INTEGER*8... yes checking size of Fortran INTEGER*8... 8 checking for C type corresponding to INTEGER*8... long long checking alignment of Fortran INTEGER*8... 1 checking for corresponding KIND value of INTEGER*8... C_LONG_LONG checking KIND value of Fortran C_LONG_LONG... (cached) 8 checking if Fortran compiler supports INTEGER*16... no checking if Fortran compiler supports REAL... yes checking size of Fortran REAL... 4 checking for C type corresponding to REAL... float checking alignment of Fortran REAL... 1 checking for corresponding KIND value of REAL... C_FLOAT checking KIND value of Fortran C_FLOAT... 4 checking if Fortran compiler supports REAL*2... no checking if Fortran compiler supports REAL*4... yes checking size of Fortran REAL*4... 4 checking for C type corresponding to REAL*4... float checking alignment of Fortran REAL*4... 1 checking for corresponding KIND value of REAL*4... C_FLOAT checking KIND value of Fortran C_FLOAT... (cached) 4 checking if Fortran compiler supports REAL*8... yes checking size of Fortran REAL*8... 8 checking for C type corresponding to REAL*8... double checking alignment of Fortran REAL*8... 1 checking for corresponding KIND value of REAL*8... C_DOUBLE checking KIND value of Fortran C_DOUBLE... 8 checking if Fortran compiler supports REAL*16... yes checking size of Fortran REAL*16... 16 checking for C type corresponding to REAL*16... long double checking alignment of Fortran REAL*16... 1 checking for corresponding KIND value of REAL*16... C_LONG_DOUBLE checking KIND value of Fortran C_LONG_DOUBLE... 16 checking for C type matching bit representation of REAL*16... pending checking if long double == REAL*16... no checking if intel compiler _Quad == REAL*16... works! checking for C type matching bit representation of REAL*16... yes checking if Fortran compiler supports DOUBLE PRECISION... yes checking size of Fortran DOUBLE PRECISION... 8 checking for C type corresponding to DOUBLE PRECISION... double checking alignment of Fortran DOUBLE PRECISION... 1 checking for corresponding KIND value of DOUBLE PRECISION... C_DOUBLE checking KIND value of Fortran C_DOUBLE... (cached) 8 checking if Fortran compiler supports COMPLEX... yes checking size of Fortran COMPLEX... 8 checking for C type corresponding to COMPLEX... float _Complex checking alignment of Fortran COMPLEX... 1 checking for corresponding KIND value of COMPLEX... C_FLOAT_COMPLEX checking KIND value of Fortran C_FLOAT_COMPLEX... 4 checking if Fortran compiler supports COMPLEX*4... no checking if Fortran compiler supports COMPLEX*8... yes checking size of Fortran COMPLEX*8... 8 checking for C type corresponding to COMPLEX*8... float _Complex checking alignment of Fortran COMPLEX*8... 1 checking for corresponding KIND value of COMPLEX*8... C_FLOAT_COMPLEX checking KIND value of Fortran C_FLOAT_COMPLEX... (cached) 4 checking if Fortran compiler supports COMPLEX*16... yes checking size of Fortran COMPLEX*16... 16 checking for C type corresponding to COMPLEX*16... double _Complex checking alignment of Fortran COMPLEX*16... 1 checking for corresponding KIND value of COMPLEX*16... C_DOUBLE_COMPLEX checking KIND value of Fortran C_DOUBLE_COMPLEX... 8 checking if Fortran compiler supports COMPLEX*32... yes checking size of Fortran COMPLEX*32... 32 checking for C type corresponding to COMPLEX*32... long double _Complex checking alignment of Fortran COMPLEX*32... 1 checking for corresponding KIND value of COMPLEX*32... C_LONG_DOUBLE_COMPLEX checking KIND value of Fortran C_LONG_DOUBLE_COMPLEX... 16 checking if Fortran compiler supports DOUBLE COMPLEX... yes checking size of Fortran DOUBLE COMPLEX... 16 checking for C type corresponding to DOUBLE COMPLEX... double _Complex checking alignment of Fortran DOUBLE COMPLEX... 1 checking for corresponding KIND value of DOUBLE COMPLEX... C_DOUBLE_COMPLEX checking KIND value of Fortran C_DOUBLE_COMPLEX... (cached) 8 checking for max Fortran MPI handle index... 2147483647 checking Fortran value for .TRUE. logical type... -1 checking for correct handling of Fortran logical arrays... yes checking for the value of MPI_STATUS_SIZE... 6 Fortran INTEGERs checking KIND value of Fortran C_INT16_T... 2 checking KIND value of Fortran C_INT32_T... 4 checking KIND value of Fortran C_INT64_T... 8 checking if building Fortran mpif.h bindings... yes checking for Fortran compiler module include flag... -I checking Fortran compiler ignore TKR syntax... not cached; checking variants checking for Fortran compiler support of TYPE(*), DIMENSION(*)... no checking for Fortran compiler support of !GCC$ ATTRIBUTES NO_ARG_CHECK... no checking for Fortran compiler support of !DEC$ ATTRIBUTES NO_ARG_CHECK... yes checking Fortran compiler ignore TKR syntax... 1:real, dimension(*):!DEC$ ATTRIBUTES NO_ARG_CHECK :: checking if Fortran compiler supports ISO_C_BINDING... yes checking if building Fortran 'use mpi' bindings... yes checking if Fortran compiler supports SUBROUTINE BIND(C)... yes checking if Fortran compiler supports TYPE, BIND(C)... yes checking if Fortran compiler supports TYPE(type), BIND(C, NAME="name")... yes checking if Fortran compiler supports PROCEDURE... yes checking if Fortran compiler supports optional arguments... yes checking if Fortran compiler supports PRIVATE... yes checking if Fortran compiler supports PROTECTED... yes checking if Fortran compiler supports ABSTRACT... yes checking if Fortran compiler supports ASYNCHRONOUS... yes checking size of Fortran type(test_mpi_handle)... 4 checking Fortran compiler F08 assumed rank syntax... not cached; checking checking for Fortran compiler support of TYPE(*), DIMENSION(..)... no checking Fortran compiler F08 assumed rank syntax... no checking which mpi_f08 implementation to build... "good" compiler, no array subsections checking if building Fortran 'use mpi_f08' bindings... yes ============================================================================ == Header file tests ============================================================================ checking alloca.h usability... yes checking alloca.h presence... yes checking for alloca.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking for inttypes.h... (cached) yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking libutil.h usability... no checking libutil.h presence... no checking for libutil.h... no checking for memory.h... (cached) yes checking for netdb.h... (cached) yes checking for netinet/in.h... (cached) yes checking for netinet/tcp.h... (cached) yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking pty.h usability... no checking pty.h presence... no checking for pty.h... no checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stropts.h usability... no checking stropts.h presence... no checking for stropts.h... no checking sys/fcntl.h usability... yes checking sys/fcntl.h presence... yes checking for sys/fcntl.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/queue.h usability... yes checking sys/queue.h presence... yes checking for sys/queue.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... yes checking sys/sockio.h presence... yes checking for sys/sockio.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/stat.h... (cached) yes checking sys/statfs.h usability... no checking sys/statfs.h presence... no checking for sys/statfs.h... no checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/tree.h usability... no checking sys/tree.h presence... no checking for sys/tree.h... no checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking net/uio.h usability... no checking net/uio.h presence... no checking for net/uio.h... no checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking sys/vfs.h usability... no checking sys/vfs.h presence... no checking for sys/vfs.h... no checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking ulimit.h usability... no checking ulimit.h presence... yes configure: WARNING: ulimit.h: present but cannot be compiled configure: WARNING: ulimit.h: check for missing prerequisite headers? configure: WARNING: ulimit.h: see the Autoconf documentation configure: WARNING: ulimit.h: section "Present But Cannot Be Compiled" configure: WARNING: ulimit.h: proceeding with the compiler's result configure: WARNING: ## ------------------------------------------------------ ## configure: WARNING: ## Report this to http://www.open-mpi.org/community/help/ ## configure: WARNING: ## ------------------------------------------------------ ## checking for ulimit.h... no checking for unistd.h... (cached) yes checking util.h usability... yes checking util.h presence... yes checking for util.h... yes checking utmp.h usability... yes checking utmp.h presence... yes checking for utmp.h... yes checking malloc.h usability... no checking malloc.h presence... no checking for malloc.h... no checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking crt_externs.h usability... yes checking crt_externs.h presence... yes checking for crt_externs.h... yes checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking ioLib.h usability... no checking ioLib.h presence... no checking for ioLib.h... no checking sockLib.h usability... no checking sockLib.h presence... no checking for sockLib.h... no checking hostLib.h usability... no checking hostLib.h presence... no checking for hostLib.h... no checking shlwapi.h usability... no checking shlwapi.h presence... no checking for shlwapi.h... no checking sys/synch.h usability... no checking sys/synch.h presence... no checking for sys/synch.h... no checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking db.h usability... yes checking db.h presence... yes checking for db.h... yes checking ndbm.h usability... yes checking ndbm.h presence... yes checking for ndbm.h... yes checking for sys/mount.h... yes checking for sys/sysctl.h... yes checking for net/if.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking if <stdbool.h> works... yes ============================================================================ == Type tests ============================================================================ checking size of pid_t... 4 checking for socklen_t... yes checking for struct sockaddr_in... (cached) yes checking for struct sockaddr_in6... yes checking for struct sockaddr_storage... yes checking whether AF_UNSPEC is declared... yes checking whether PF_UNSPEC is declared... yes checking whether AF_INET6 is declared... yes checking whether PF_INET6 is declared... yes checking if SA_RESTART defined in signal.h... yes checking for struct sockaddr.sa_len... yes checking for struct dirent.d_type... yes checking for siginfo_t.si_fd... no checking for siginfo_t.si_band... yes checking for struct statfs.f_type... no checking for struct statfs.f_fstypename... yes checking for struct statvfs.f_basetype... no checking for struct statvfs.f_fstypename... no checking for pointer diff type... long (size: 8) checking for type of MPI_Aint... long (size: 8) checking for type of MPI_Count... long long (size: 8) checking for type of MPI_Offset... long long (size: 8) checking for an MPI datatype for MPI_Offset... MPI_LONG_LONG checking for MPI_INTEGER_KIND... 4 checking for MPI_ADDRESS_KIND... 8 checking for MPI_COUNT_KIND... 8 checking for MPI_OFFSET_KIND... 8 ============================================================================ == Library and Function tests ============================================================================ checking for library containing openpty... none required checking for library containing gethostbyname... none required checking for library containing socket... none required checking for library containing sched_yield... none required checking for library containing dirname... none required checking for library containing ceil... none required checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for openpty... yes checking for isatty... yes checking for getpwuid... yes checking for fork... yes checking for waitpid... yes checking for execve... yes checking for pipe... yes checking for ptsname... yes checking for setsid... yes checking for mmap... yes checking for tcgetpgrp... yes checking for posix_memalign... yes checking for strsignal... yes checking for sysconf... yes checking for syslog... yes checking for vsyslog... yes checking for regcmp... no checking for regexec... yes checking for regfree... yes checking for _NSGetEnviron... yes checking for socketpair... yes checking for strncpy_s... no checking for usleep... yes checking for mkfifo... yes checking for dbopen... yes checking for dbm_open... yes checking for statfs... yes checking for statvfs... yes checking for setpgid... yes checking for htonl define... yes checking for htonl... yes checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking whether __func__ is declared... yes ============================================================================ == System-specific tests ============================================================================ checking for _SC_NPROCESSORS_ONLN... yes checking whether byte ordering is bigendian... no checking for broken qsort... no checking if word-sized integers must be word-size aligned... no checking if C compiler and POSIX threads work as is... yes checking if C++ compiler and POSIX threads work as is... yes checking if Fortran compiler and POSIX threads work as is... yes checking for pthread_mutexattr_setpshared... yes checking for pthread_condattr_setpshared... yes checking for PTHREAD_MUTEX_ERRORCHECK_NP... no checking for PTHREAD_MUTEX_ERRORCHECK... yes checking for working POSIX threads package... yes checking for type of thread support... posix checking if threads have different pids (pthreads on linux)... yes configure: WARNING: This version of Open MPI only supports environments where configure: WARNING: threads have the same PID. Please use an older version of configure: WARNING: Open MPI if you need support on systems with different configure: WARNING: PIDs for threads in the same process. Open MPI 1.4.x configure: WARNING: supports such systems, as does at least some versions the configure: WARNING: Open MPI 1.5.x series. configure: error: Cannot continue
