I also concur with Jeff about asking software specific questions at the software-site, abinit already has a pretty active forum: http://forum.abinit.org/ So any questions can also be directed there.
2015-02-03 19:20 GMT+00:00 Nick Papior Andersen <nickpap...@gmail.com>: > > > 2015-02-03 19:12 GMT+00:00 Elio Physics <elio-phys...@live.com>: > >> Hello, >> >> thanks for your help. I have tried: >> >> ./configure --with-mpi-prefix=/usr FC=ifort CC=icc >> >> But i still get the same error. Mind you if I compile it serially, that >> is ./configure FC=ifort CC=icc >> >> It works perfectly fine. >> >> We do have MPI installed.. I am using Quantum Espresso code with mpirun. >> > Sorry I thought you where also compiling your own MPI. > >> >> I am attaching the config.log file. I appreciate your help. >> > I see you are trying to install abinit, I would highly recommend you to > utilize their build.ac module method. > Instead of then passing arguments to the command line you create a > build.ac file and configure like this: > ./configure --with-config-file > (I would recommend you to build abinit in a sub-folder) > > However, your problem is that your used MPI version is compiled against > gcc (the 4.1) so that will never work, even if you specify FC/CC > Either: > A) Use an MPI version installed using the intel compiler (if not provided > by your cluster administrator you need to install it) > B) Get a new gcc compiler > >> >> Regards >> >> Elio >> >> >> ------------------------------ >> From: nickpap...@gmail.com >> Date: Tue, 3 Feb 2015 17:21:51 +0000 >> To: us...@open-mpi.org >> Subject: Re: [OMPI users] configuring a code with MPI/OPENMPI >> >> >> First try and correct your compilation by using the intel c-compiler AND >> the fortran compiler. You should not mix compilers. >> CC=icc FC=ifort >> Else the config.log is going to be necessary to debug it further. >> >> PS: You could also try and convince your cluster administrator to provide >> a more recent compiler >> PPS: Do your cluster not have an MPI installation already present? >> >> >> 2015-02-03 17:13 GMT+00:00 Elio Physics <elio-phys...@live.com>: >> >> Dear all, >> >> II am trying to configure a code with mpi (for parallel processing) to >> do some calculations so basically I type: >> >> ./configure >> >> and I get: >> >> configure: error: Fortran compiler does not provide iso_c_binding module. >> Use a more recent version or a different compiler >> >> >> which means that my GCC 4.1 compiler is too old to build the code >> (something i do not have control over..It is a cluster of the Uni where I >> work). so I tried another compiler ifort: >> >> ./configure --enable-mpi=yes FC=ifort >> but now I get another error: >> >> >> >> ============================================================================== >> === Multicore architecture support >> === >> >> >> ============================================================================== >> >> checking whether to enable OpenMP support... no >> checking whether to build MPI code... yes >> checking whether the C compiler supports MPI... no >> checking whether the C++ compiler supports MPI... no >> checking whether the Fortran Compiler supports MPI... no >> checking whether MPI is usable... no >> configure: error: MPI support is broken - please fix your config >> parameters and/or MPI installation >> >> Agaiin, I tried ti give a path for the mpi compiler: >> >> ./configure --enable-mpi --with-mpi-prefix=/usr FC=ifort >> >> WHICH APPARENTLY SOLVED THE PREVIOUS ERROR: >> >> >> ============================================================================== >> === Multicore architecture startup >> === >> >> >> ============================================================================== >> >> configure: Initializing MPI support >> configure: looking for MPI in /usr >> checking for a MPI C compiler... /usr/bin/mpicc >> checking for a MPI C++ compiler... /usr/bin/mpicxx >> checking for a MPI Fortran compiler... /usr/bin/mpif90 >> configure: creating wrapper for MPI Fortran compiler >> configure: GPU support disabled from command-line >> >> But stranegly enough got me back to the furst error although I am using >> ifort!! >> >> checking whether the Fortran compiler provides the iso_c_binding >> module... configure: error: Fortran compiler does not provide iso_c_binding >> module. Use a more recent version or a different compiler >> >> so what is going on?? please can anyone help me on this..Thank youu >> >> Elio >> University of Rondonia >> Brazil >> >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users >> Link to this post: >> http://www.open-mpi.org/community/lists/users/2015/02/26268.php >> >> >> >> >> -- >> Kind regards Nick >> >> _______________________________________________ users mailing list >> us...@open-mpi.org Subscription: >> http://www.open-mpi.org/mailman/listinfo.cgi/users Link to this post: >> http://www.open-mpi.org/community/lists/users/2015/02/26270.php >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users >> Link to this post: >> http://www.open-mpi.org/community/lists/users/2015/02/26273.php >> > > > > -- > Kind regards Nick > -- Kind regards Nick
