Hi - I'm trying to compile openmpi 4.0.0 with srun support, so I'm trying to
tell openmpi's configure where to find the relevant files by doing
$ ./configure --with-verbs --with-ofi --with-pmi=/usr/include/slurm
--with-pmi-libdir=/usr/lib64 --prefix=/share/apps/mpi/openmpi/4.0.0/ib/gnu
verbs and ofi are there from past versions (recycling the commands from openmpi
3.1.X), although I think it's actually using ucx for our IB interfaces.
The directories I'm specifying are correct:
[bernadm@tin openmpi-4.0.0]$ ls /usr/include/slurm/pmi2.h
/usr/include/slurm/pmi2.h
[bernadm@tin openmpi-4.0.0]$ ls /usr/lib64/libpmi2*
/usr/lib64/libpmi2.so /usr/lib64/libpmi2.so.0 /usr/lib64/libpmi2.so.0.0.0
but when I try to compile, it fails with error:
make[2]: Entering directory
`/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.0/opal/mca/pmix/s1'
CC mca_pmix_s1_la-pmix_s1.lo
pmix_s1.c:29:17: fatal error: pmi.h: No such file or directory
#include <pmi.h>
^
compilation terminated.
make[2]: *** [mca_pmix_s1_la-pmix_s1.lo] Error 1
make[2]: Leaving directory
`/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.0/opal/mca/pmix/s1'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.0/opal'
make: *** [all-recursive] Error 1
[bernadm@tin openmpi-4.0.0]$ less Makefile
[bernadm@tin openmpi-4.0.0]$ pwd
/home_tin/bernadm/configuration/110_compile_mpi/OpenMPI/openmpi-4.0.0
[bernadm@tin openmpi-4.0.0]$ head config.log
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by Open MPI configure 4.0.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
## --------- ##
## Platform. ##
poking around config.log and Makefile, I don't see any evidence of anything
like "-I/usr/local/slurm", so maybe it's not surprising that compilation fails,
but am I supposed to be doing something different/additional to get this to
work?
thanks,
Noam
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