You can extract them to a dir of your project and use jar override, then you can distribute it with the rest of your files.
A similar option would be to create a separate local repository which is checked in
with the rest of your project.
Something like this: projectRoot/ lib/ com.sun/ jars/ mailapi.jar ejb-2.1.jar
Then, you could instruct people (or maybe write a maven.xml goal) to include this directory as a "remote" repo
maven.repo.remote=file://///path/to/projectRoot/lib,www.ibiblio.org/maven
The first time that you run it, the jars will be copied from the special local repo
to the main one.
This is how I'm doing it.
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