Dear Gerhard, I had to wait for my turn in the queuing job submission to check if the same error comes
My job file now looks like (as per your suggestion) #!/bin/csh -f # set file=ABr2_phonon # foreach i ( \ 1 \ 2 \ 3 \ 4 \ 5 \ 6 \ 7 \ 8 \ 9 \ 10 \ 11 \ 12 \ 13 \ 14 \ 15 \ 16 \ 17 \ 18 \ ) cd case_$i echo running case_$i # # select other options if necessary run_lapw -I -i 200 -cc 0.0001 -fc 0.1 -p # # select other save-name if necessary save_lapw case_${i}_gga_rkm8.00_12000k cd .. end Surprisingly, the same error comes I am pasting the script file which was generated Wien2k Machine file TMPDIR/machines 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx107 1:ibnx107 1:ibnx107 1:ibnx107 1:ib nx107 1:ibnx107 1:ibnx107 1:ibnx107 1:ibnx63 1:ibnx63 1:ibnx63 1:ibnx20 granular ity:1 extrafine:1 Too many ('s. This time as well, it is "(" rather than "/" Thanks wand waiting for your suggestions Suddhasattwa _____ From: wien-boun...@zeus.theochem.tuwien.ac.at [mailto:wien-bounces at zeus.theochem.tuwien.ac.at] On Behalf Of Gerhard Fecher Sent: Monday, January 03, 2011 1:13 PM To: A Mailing list for WIEN2k users Subject: Re: [Wien] Problem in run_phonon script The error message is just wrong it is Too many \'s and not Too many ('s. The problem is in the run_phonon job file for some reason the template creates \\ instead of \ replace: foreach i ( \\ 1 \\ 2 \\ etc. by: foreach i ( \ 1 \ 2 \ etc Ciao Gerhard ==================================== Dr. Gerhard H. Fecher Institut of Inorganic and Analytical Chemistry Johannes Gutenberg - University 55099 Mainz ________________________________________ Von: wien-bounces at zeus.theochem.tuwien.ac.at [wien-bounces at zeus.theochem.tuwien.ac.at]" im Auftrag von "Ghosh SUDDHASATTWA [ssghosh at igcar.gov.in] Gesendet: Montag, 3. Januar 2011 08:29 Bis: 'A Mailing list for WIEN2k users' Betreff: [Wien] Problem in run_phonon script Dear Dr. Blaha, I am running k point parallel in Wien2k using the following job script #!/bin/bash # #$ -cwd #$ -j y #$ -S /bin/bash #$ -V # RJ: Script to run Wien2k-kpoint parallel job thru SGE # Use kpoint PE #hc=`cat $PE_HOSTFILE` #echo "-------------------------" #echo "Contents of $PE_HOSTFILE :" #echo $hc #echo "-------------------------" #echo "Hostname: " #hostname #echo "No. of Slots" #echo $NSLOTS echo "Wien2k Machine file TMPDIR/machines" mf=`cat $TMPDIR/machines.wien2k-kpoint` echo $mf cp $TMPDIR/machines.wien2k-kpoint .machines # RJ: command for kpoint parallel run run_phonon The script works very well (some 50-80 jobs have been completed) when I use #!/bin/bash # #$ -cwd #$ -j y #$ -S /bin/bash #$ -V # RJ: Script to run Wien2k-kpoint parallel job thru SGE # Use kpoint PE #hc=`cat $PE_HOSTFILE` #echo "-------------------------" #echo "Contents of $PE_HOSTFILE :" #echo $hc #echo "-------------------------" #echo "Hostname: " #hostname #echo "No. of Slots" #echo $NSLOTS echo "Wien2k Machine file TMPDIR/machines" mf=`cat $TMPDIR/machines.wien2k-kpoint` echo $mf cp $TMPDIR/machines.wien2k-kpoint .machines # RJ: command for kpoint parallel run Run_lapw -cc 0.0001 -ec 0.0001 -in1ef -p The job is submitted by qsub -pe kpoint 6 kpoint.sh Where kpoint.sh is the job script file When I replace wih run_phonon, the job is submitted but suddenly disappears!!!!!! I checked the script files and noted the following Wien2k machine file TMPDIR/machines 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx79 granularity:1 extrafine:1 Too many ('s. Can any body tell me what is the issue here? There are no issues with the script file as I have been using this for quite some time Suddhasattwa _______________________________________________ Wien mailing list Wien at zeus.theochem.tuwien.ac.at http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien _____ No virus found in this message. Checked by AVG - www.avg.com Version: 10.0.1170 / Virus Database: 1435/3355 - Release Date: 01/02/11 -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://zeus.theochem.tuwien.ac.at/pipermail/wien/attachments/20110104/c3c23a64/attachment.htm>