You are listing a file named "machines", it should be ".machines" And I don't think your .machines file is correct (except when the missing linebreaks are only in the email; each 1:ibnxXX should be in an extra line!
Change the foreach line to: foreach ( 1 2 3 4 .. 18 ) > foreach i ( \ > > 1 \ > > 2 \ > > 3 \ > > 4 \ > > 5 \ > > 6 \ > > 7 \ > > 8 \ > > 9 \ > > 10 \ > > 11 \ > > 12 \ > > 13 \ > > 14 \ > > 15 \ > > 16 \ > > 17 \ > > 18 \ > > ) > > cd case_$i > > echo running case_$i > > # > > # select other options if necessary > > run_lapw -I -i 200 -cc 0.0001 -fc 0.1 -p > > # > > # select other save-name if necessary > > save_lapw case_${i}_gga_rkm8.00_12000k > > cd .. > > end > > Surprisingly, the same error comes > > I am pasting the script file which was generated > > Wien2k Machine file TMPDIR/machines > > 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx107 1:ibnx107 1:ibnx107 1:ibnx107 > 1:ib > > nx107 1:ibnx107 1:ibnx107 1:ibnx107 1:ibnx63 1:ibnx63 1:ibnx63 1:ibnx20 > granular > > ity:1 extrafine:1 > > Too many (?s. > > This time as well, it is ?(? rather than ?/? > > Thanks wand waiting for your suggestions > > Suddhasattwa > > ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- > > *From:*wien-bounces at zeus.theochem.tuwien.ac.at [mailto:wien-bounces at > zeus.theochem.tuwien.ac.at] *On Behalf Of *Gerhard Fecher > *Sent:* Monday, January 03, 2011 1:13 PM > *To:* A Mailing list for WIEN2k users > *Subject:* Re: [Wien] Problem in run_phonon script > > The error message is just wrong it is Too many \'s and not Too many (?s. > The problem is in the run_phonon job file > for some reason the template creates \\ instead of \ > > replace: > foreach i ( \\ > 1 \\ > 2 \\ > etc. > > by: > foreach i ( \ > 1 \ > 2 \ > etc > > > > > Ciao > Gerhard > > ==================================== > Dr. Gerhard H. Fecher > Institut of Inorganic and Analytical Chemistry > Johannes Gutenberg - University > 55099 Mainz > ________________________________________ > Von: wien-bounces at zeus.theochem.tuwien.ac.at [wien-bounces at > zeus.theochem.tuwien.ac.at]" im Auftrag von "Ghosh SUDDHASATTWA > [ssghosh at igcar.gov.in] > Gesendet: Montag, 3. Januar 2011 08:29 > Bis: 'A Mailing list for WIEN2k users' > Betreff: [Wien] Problem in run_phonon script > > Dear Dr. Blaha, > I am running k point parallel in Wien2k using the following job script > > #!/bin/bash > # > #$ -cwd > #$ -j y > #$ -S /bin/bash > #$ -V > > # RJ: Script to run Wien2k-kpoint parallel job thru SGE > # Use kpoint PE > > #hc=`cat $PE_HOSTFILE` > #echo "-------------------------" > #echo "Contents of $PE_HOSTFILE :" > #echo $hc > #echo "-------------------------" > #echo "Hostname: " > #hostname > #echo "No. of Slots" > #echo $NSLOTS > > echo "Wien2k Machine file TMPDIR/machines" > mf=`cat $TMPDIR/machines.wien2k-kpoint` > echo $mf > > cp $TMPDIR/machines.wien2k-kpoint .machines > > # RJ: command for kpoint parallel run > run_phonon > > > The script works very well (some 50-80 jobs have been completed) when I use > #!/bin/bash > # > #$ -cwd > #$ -j y > #$ -S /bin/bash > #$ -V > > # RJ: Script to run Wien2k-kpoint parallel job thru SGE > # Use kpoint PE > > #hc=`cat $PE_HOSTFILE` > #echo "-------------------------" > #echo "Contents of $PE_HOSTFILE :" > #echo $hc > #echo "-------------------------" > #echo "Hostname: " > #hostname > #echo "No. of Slots" > #echo $NSLOTS > > echo "Wien2k Machine file TMPDIR/machines" > mf=`cat $TMPDIR/machines.wien2k-kpoint` > echo $mf > > cp $TMPDIR/machines.wien2k-kpoint .machines > > # RJ: command for kpoint parallel run > Run_lapw ?cc 0.0001 ?ec 0.0001 ?in1ef ?p > > > The job is submitted by > qsub ?pe kpoint 6 kpoint.sh > Where kpoint.sh is the job script file > > When I replace wih run_phonon, the job is submitted but suddenly > disappears!!!!!! > > > I checked the script files and noted the following > > Wien2k machine file TMPDIR/machines > 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx79 1:ibnx79 granularity:1 > extrafine:1 > Too many (?s. > > > Can any body tell me what is the issue here? > There are no issues with the script file as I have been using this for quite > some time > > Suddhasattwa > > > > > _______________________________________________ > Wien mailing list > Wien at zeus.theochem.tuwien.ac.at > http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien > > ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- > > No virus found in this message. > Checked by AVG - www.avg.com <http://www.avg.com> > Version: 10.0.1170 / Virus Database: 1435/3355 - Release Date: 01/02/11 > > > > _______________________________________________ > Wien mailing list > Wien at zeus.theochem.tuwien.ac.at > http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien -- ----------------------------------------- Peter Blaha Inst. Materials Chemistry, TU Vienna Getreidemarkt 9, A-1060 Vienna, Austria Tel: +43-1-5880115671 Fax: +43-1-5880115698 email: pblaha at theochem.tuwien.ac.at -----------------------------------------