Another comment (for my defense):

It will be clear that nobody is attacking... ;-)

Always check the UG as primary source of information !

In the sections   lapw1   and run_lapw   the correct behavior is described.

The   -in1ef   switch is never mentioned (it is an old, unsupported option)
The   -in1new XX   switch is still active and may be useful in certain 
situations, but
                   as mentioned, it can be "dangerous".

Shame on me, but I rarely succeed rereading the UG from scratch with every new version. At present, the status change of -in1ef is undocumented (=not mentioned in the UG, and not in the update list). Perhaps a short notice in the UG about its obsoleteness would be useful, such that the string 'in1ef' is at least found when grepping the UG?

Look into case.scf1, not into case.in1 !!!

That shows indeed that with or without -in1ef the same, tuned, linearization energies are used:

          ATOMIC SPHERE DEPENDENT PARAMETERS FOR ATOM  Fe1
:e__0001: OVERALL ENERGY PARAMETER IS    0.6887
          OVERALL BASIS SET ON ATOM IS LAPW
:E1_0001: E( 1)=    0.6887
             APW+lo

          ATOMIC SPHERE DEPENDENT PARAMETERS FOR ATOM  Fe1
:e__0001: OVERALL ENERGY PARAMETER IS    0.6886
          OVERALL BASIS SET ON ATOM IS LAPW
:E1_0001: E( 1)=    0.6886
             APW+lo

Thanks for clarifying this,
Stefaan
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