I am in the same situation. The last warning that you are mentioning, InstalLocation is missing, if you compare both entrance in the registry values HKEY_LOCAL_MACHINE\SOFTWARE\Wow6432Node\Microsoft\Windows\CurrentVersion\Uninstall\{GUID} and the one in HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft\Windows\CurrentVersion\Uninstall\{GUID}, both are different, and the one in the Wow6432 directory has a parameter InstallLocation which I guess is empty. I am currently trying to work something out, trying to pass the InstallLocation from the bootrstrapper to avoid the warning. Let me know if you did remove the warning. Cheers.
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