I've not looked through the other patches, but I don't think any changes that are made to xml2-config have to do with XML catalog support. Those kind of config scripts are normally just patched to add in things like default linker paths. Programs don't have to be aware of where the default catalog is, the library is configured to know when it's built.
Programs - or more specifically, installation mechanisms for those programs - certainly do need to know where the default catalog resides.
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