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Hello David-- > I'm running the dock.py script using Torque PBS and xplor -parallel -machines > machinefile -py dock.py > > All runs fine, but I can't figure out how to kill the job - qdel will > kill the controlling process, but the various calculation jobs keep > running and don't report to xpbsmon and are invisible in qstat. This > hasn't been an issue with the non-python scripts, but is there a way > to enforce job ending? In my opinion, this is more of a problem with ssh and torque configuration than Xplor-NIH. [ssh doesn't propagate signals and your torque setup doesn't run a useful epilogue script] Anyway, you can probably specify your own epilogue script on the qsub command line qsub -l epilogue=/home/usertom/dev/epilogue_script.sh job.sh epilogue_script.sh should contain something like **BEGIN** #!/bin/sh killall xplor **END** Also, please try using pbsxplor- if it works for you, I will add an epilogue to always clean thing up. best regards-- Charles -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (GNU/Linux) Comment: Processed by Mailcrypt 3.5.9 <http://mailcrypt.sourceforge.net/> iEYEARECAAYFAk0/Kv8ACgkQPK2zrJwS/laS3QCfZ+hFd17G+Kss5EEsqBEhmbYg dmkAnRzzY6yMwQeJovR8eB2prs0wNSs2 =vp0S -----END PGP SIGNATURE-----
