In the terminal output, it looks like you are installing sagemath-standard 10.2 in an environment with sage-conf 10.3.beta7. Try forcing sagemath-standard==10.3.beta7 (or use the switch "--pre" with pip install).
(In https://github.com/sagemath/sage/pull/37261 I am updating the instructions; you may want to take a look.) On Thursday, February 8, 2024 at 4:23:24 PM UTC-8 Sai Chandhrasekhar wrote: > I got rid of that error message but I still get a failure to build the > wheel for sagemath-standard. Here's the terminal output I got: > > > On Thursday, February 8, 2024 at 4:43:46 PM UTC-6 Matthias Koeppe wrote: > >> You can try if 'export MAKE="make -j4"' fixes this >> >> On Thursday, February 8, 2024 at 1:21:32 PM UTC-8 Sai Chandhrasekhar >> wrote: >> >>> When running python3 -m pip install --no-build-isolation >>> sagemath-standard I got this error message: >>> >>> clang -bundle -undefined dynamic_lookup -g >>> -L/Users/user/.sage/sage-10.3.beta7-Darwin-x86_64/local/lib >>> -Wl,-rpath,/Users/user/.sage/sage-10.3.beta7-Darwin-x86_64/local/lib >>> build/temp.macosx-10.9-universal2-cpython-311/build/cythonized/sage/monoids/free_abelian_monoid_element.o >>> >>> -lgmp -o build/lib.macosx-10.9-universal2-cpython-311/sage/monoids/ >>> free_abelian_monoid_element.cpython-311-darwin.so -lpari >>> >>> error: command '/usr/bin/clang' failed with exit code 1 >>> >>> Exception ignored in: <function Pool.__del__ at 0x11ce2dee0> >>> >>> Traceback (most recent call last): >>> >>> File >>> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", >>> >>> line 271, in __del__ >>> >>> self._change_notifier.put(None) >>> >>> File >>> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/queues.py", >>> >>> line 377, in put >>> >>> self._writer.send_bytes(obj) >>> >>> File >>> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", >>> >>> line 199, in send_bytes >>> >>> self._send_bytes(m[offset:offset + size]) >>> >>> File >>> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", >>> >>> line 410, in _send_bytes >>> >>> self._send(header + buf) >>> >>> File >>> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", >>> >>> line 367, in _send >>> >>> n = write(self._handle, buf) >>> >>> ^^^^^^^^^^^^^^^^^^^^^^^^ >>> >>> OSError: [Errno 9] Bad file descriptor >>> >>> On Thursday, February 8, 2024 at 1:46:26 PM UTC-6 Sai Chandhrasekhar >>> wrote: >>> >>>> I was able to get it to work. I found out I added the wrong location to >>>> PATH. I fixed it and got the command to work. >>>> >>>> On Thursday, February 8, 2024 at 1:00:52 PM UTC-6 Sai Chandhrasekhar >>>> wrote: >>>> >>>>> I did get a warning about that and added it to my PATH before running >>>>> the command, but I still got the result. I did what you suggested and >>>>> still >>>>> got the same error message. >>>>> >>>>> On Thursday, February 8, 2024 at 12:27:29 PM UTC-6 Matthias Koeppe >>>>> wrote: >>>>> >>>>>> That's great progress. >>>>>> >>>>>> Did pip issue any warnings when you installed sage_conf? >>>>>> In particular, it may have warned that the installation location for >>>>>> scripts is not in your PATH. >>>>>> If so, you can fix it as follows: >>>>>> >>>>>> export PATH="$(python3 -c 'import sysconfig; >>>>>> print(sysconfig.get_path("scripts", "posix_user"))'):$PATH" >>>>>> >>>>>> On Thursday, February 8, 2024 at 8:38:27 AM UTC-8 Sai Chandhrasekhar >>>>>> wrote: >>>>>> >>>>>>> I was able to install sage_conf successfully, but when I run, >>>>>>> "python3 -m pip install $(sage-config SAGE_SPKG_WHEELS)/*.whl >>>>>>> sage_setup", >>>>>>> I get the following error messages: >>>>>>> >>>>>>> zsh: command not found: sage-config >>>>>>> >>>>>>> zsh: no matches found: /*.whl >>>>>>> >>>>>>> On Wednesday, February 7, 2024 at 3:13:27 PM UTC-6 Matthias Koeppe >>>>>>> wrote: >>>>>>> >>>>>>>> To start from scratch in this mode of installation, you will need >>>>>>>> to remove the directory >>>>>>>> "/Users/user/.sage/sage-10.3.beta7-Darwin-x86_64/" >>>>>>>> >>>>>>>> On Wednesday, February 7, 2024 at 12:10:21 PM UTC-8 Sai >>>>>>>> Chandhrasekhar wrote: >>>>>>>> >>>>>>>>> I am still getting the same error. In the config.log files, I see >>>>>>>>> this: x86_64-apple-darwin13.4.0-clang: command not found. I have >>>>>>>>> tried >>>>>>>>> uninstalling and reinstalling Xcode and the Xcode command line tools, >>>>>>>>> but I >>>>>>>>> still get the same result. >>>>>>>>> >>>>>>>>> >>>>>>>>> On Wednesday, February 7, 2024 at 11:06:12 AM UTC-6 Matthias >>>>>>>>> Koeppe wrote: >>>>>>>>> >>>>>>>>>> Thanks for sharing these logs. >>>>>>>>>> The key failure is here: >>>>>>>>>> >>>>>>>>>> configure:3938: x86_64-apple-darwin13.4.0-clang -march=core2 >>>>>>>>>> -mtune=haswell -mssse3 -ftree-vectorize -fPIC >>>>>>>>>> -fstack-protector-strong -O2 >>>>>>>>>> -pipe -isystem /Users/user/anaconda3/include -D_FORTIFY_SOURCE=2 >>>>>>>>>> -isystem >>>>>>>>>> /Users/user/anaconda3/include >>>>>>>>>> -L/Users/user/.sage/sage-10.2-Darwin-x86_64/local/lib >>>>>>>>>> -Wl,-ld_classic,-rpath,/Users/user/.sage/sage-10.2-Darwin-x86_64/local/lib >>>>>>>>>> >>>>>>>>>> -L/Users/user/.sage/sage-10.2-Darwin-x86_64/local/lib >>>>>>>>>> -Wl,-ld_classic,-rpath,/Users/user/.sage/sage-10.2-Darwin-x86_64/local/lib >>>>>>>>>> >>>>>>>>>> -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs >>>>>>>>>> -Wl,-rpath,/Users/user/anaconda3/lib -L/Users/user/anaconda3/lib >>>>>>>>>> conftest.c >>>>>>>>>> >&5 >>>>>>>>>> ld: library not found for -ld_classic >>>>>>>>>> clang-16: error: linker command failed with exit code 1 (use -v >>>>>>>>>> to see invocation) >>>>>>>>>> >>>>>>>>>> What's happening here is that a workaround that we use on macOS >>>>>>>>>> for compilation with XCode is incompatible with the conda toolchain. >>>>>>>>>> I have a fix for this in >>>>>>>>>> https://github.com/sagemath/sage/pull/37237 >>>>>>>>>> >>>>>>>>>> For now, if you want to use the installation method using "pip >>>>>>>>>> install sage_conf", deactivate conda first. >>>>>>>>>> Or alternatively if you want to use conda, use one of the >>>>>>>>>> installation methods described in >>>>>>>>>> https://doc.sagemath.org/html/en/installation/conda.html >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> On Tuesday, February 6, 2024 at 4:10:53 PM UTC-8 Sai >>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>> >>>>>>>>>>> I also tried to run the install command again with the --pre >>>>>>>>>>> flag and got the same result. >>>>>>>>>>> >>>>>>>>>>> On Tuesday, February 6, 2024 at 5:54:11 PM UTC-6 Sai >>>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>>> >>>>>>>>>>>> On Tuesday, February 6, 2024 at 5:14:56 PM UTC-6 Matthias >>>>>>>>>>>> Koeppe wrote: >>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> and >>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/libatomic_ops-7.8.0/src/config.log >>>>>>>>>>>>> >>>>>>>>>>>>> please >>>>>>>>>>>>> >>>>>>>>>>>>> On Tuesday, February 6, 2024 at 2:36:21 PM UTC-8 Sai >>>>>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>>>>> >>>>>>>>>>>>>> On Tuesday, February 6, 2024 at 4:22:59 PM UTC-6 Matthias >>>>>>>>>>>>>> Koeppe wrote: >>>>>>>>>>>>>> >>>>>>>>>>>>>>> Could you post one of these log files please? For example >>>>>>>>>>>>>>> info-6.8.log >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> And could you try "python3 -m pip install --pre sage_conf" >>>>>>>>>>>>>>> also? >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> On Tuesday, February 6, 2024 at 12:15:08 PM UTC-8 Sai >>>>>>>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> When I ran python3 -m pip install sage_conf I got this >>>>>>>>>>>>>>>> error message: >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> Error building Sage. >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> The following package(s) may have failed to build >>>>>>>>>>>>>>>> (not necessarily >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> during this run of 'make all-build'): >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> * package: gf2x-1.3.0 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/gf2x-1.3.0.log >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/gf2x-1.3.0 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> * package: cddlib-0.94m >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/cddlib-0.94m.log >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/cddlib-0.94m >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> * package: cliquer-1.22 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/cliquer-1.22.log >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/cliquer-1.22 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> * package: libatomic_ops-7.8.0 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/libatomic_ops-7.8.0.log >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/libatomic_ops-7.8.0 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> * package: m4ri-20200115 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/m4ri-20200115.log >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/m4ri-20200115 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> * package: ecm-7.0.5 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/ecm-7.0.5.log >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/ecm-7.0.5 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> * package: info-6.8 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/info-6.8.log >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/info-6.8 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> * package: pari-2.15.4 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> last build time: Feb 6 14:08 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/pari-2.15.4.log >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/pari-2.15.4 >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> For those packages the following error message was printed >>>>>>>>>>>>>>>> earlier: >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> configure: error: C compiler cannot create executables >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> On Tuesday, February 6, 2024 at 2:01:03 PM UTC-6 Matthias >>>>>>>>>>>>>>>> Koeppe wrote: >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> According to your config.log, the run of "configure" >>>>>>>>>>>>>>>>> succeeded. >>>>>>>>>>>>>>>>> That config.log contains error messages from various >>>>>>>>>>>>>>>>> compiler invocations is a normal part of the configure >>>>>>>>>>>>>>>>> process. >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> What is the actual problem that you encountered? >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> On Monday, February 5, 2024 at 2:58:36 PM UTC-8 Sai >>>>>>>>>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>> On Monday, February 5, 2024 at 4:48:08 PM UTC-6 Dima >>>>>>>>>>>>>>>>>> Pasechnik wrote: >>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>> On 5 February 2024 21:58:54 GMT, "dan...@gmail.com" < >>>>>>>>>>>>>>>>>>> dan...@gmail.com> wrote: >>>>>>>>>>>>>>>>>>> >You could just use Sage_macOS >>>>>>>>>>>>>>>>>>> >< >>>>>>>>>>>>>>>>>>> https://github.com/3-manifolds/Sage_macOS/releases/tag/v2.2.0>, >>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>> quick and >>>>>>>>>>>>>>>>>>> >easy! >>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>> for Sage development, you need a source install. >>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>> >On Monday, February 5, 2024 at 3:49:02 PM UTC-6 >>>>>>>>>>>>>>>>>>> Matthias Koeppe wrote: >>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>> >> We would need to see the full logs >>>>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>>>> >> On Monday, February 5, 2024 at 1:26:31 PM UTC-8 Sai >>>>>>>>>>>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>>>> >>> Hello, >>>>>>>>>>>>>>>>>>> >>> >>>>>>>>>>>>>>>>>>> >>> When I tried to run python3 -m pip install >>>>>>>>>>>>>>>>>>> sage_conf, I got this error >>>>>>>>>>>>>>>>>>> >>> message from config.log. I tried to change to GCC >>>>>>>>>>>>>>>>>>> but then I got a message >>>>>>>>>>>>>>>>>>> >>> that Sage cannot be built on macOS with GNU's gcc. >>>>>>>>>>>>>>>>>>> Any suggestions on what >>>>>>>>>>>>>>>>>>> >>> to do would be appreciated. >>>>>>>>>>>>>>>>>>> >>> configure:6595: x86_64-apple-darwin13.4.0-clang -V >>>>>>>>>>>>>>>>>>> >&5 >>>>>>>>>>>>>>>>>>> >>> clang-16: error: argument to '-V' is missing >>>>>>>>>>>>>>>>>>> (expected 1 value) >>>>>>>>>>>>>>>>>>> >>> clang-16: error: no input files >>>>>>>>>>>>>>>>>>> >>> configure:6606: $? = 1 >>>>>>>>>>>>>>>>>>> >>> configure:6595: x86_64-apple-darwin13.4.0-clang >>>>>>>>>>>>>>>>>>> -qversion >&5 >>>>>>>>>>>>>>>>>>> >>> clang-16: error: unknown argument '-qversion'; did >>>>>>>>>>>>>>>>>>> you mean '--version'? >>>>>>>>>>>>>>>>>>> >>> clang-16: error: no input files >>>>>>>>>>>>>>>>>>> >>> configure:6606: $? = 1 >>>>>>>>>>>>>>>>>>> >>> configure:6595: x86_64-apple-darwin13.4.0-clang >>>>>>>>>>>>>>>>>>> -version >&5 >>>>>>>>>>>>>>>>>>> >>> clang-16: error: unknown argument '-version'; did >>>>>>>>>>>>>>>>>>> you mean '--version'? >>>>>>>>>>>>>>>>>>> >>> clang-16: error: no input files >>>>>>>>>>>>>>>>>>> >>> >>>>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/db61bfa0-c6cb-4676-83ae-e5827cc261e6n%40googlegroups.com.
