Re: [sage-release] Re: Sage 10.2.beta3 released
On Mon, 18 Sept 2023 at 09:50, Dima Pasechnik wrote: > run > > make pytest > > (or ./sage -i pytest) > > to install it and have it ready for Sage. > (i.e. install it into Sage's venv) > Thanks Dima John > > On Mon, Sep 18, 2023 at 9:04 AM John Cremona > wrote: > > > > What should I do to avoid this message when running "make testlong": > > > > pytest is not installed in the venv, skip checking tests that rely on it > > > > i.e. how should I install pytest. System-wide or what? > > > > John > > > > On Mon, 18 Sept 2023 at 01:08, Matthias Köppe > wrote: > >> > >> I've pushed a fix to https://github.com/sagemath/sage/pull/36276 > >> > >> On Sunday, September 17, 2023 at 5:02:05 PM UTC-7 Matthias Köppe wrote: > >>> > >>> Yes, it's a bug in the build system. Running CONFIG_SHELL="bash -x" > ./configure > >>> > >>> + printf '%s\n' 'configure:49868: result: no; skipping check' > >>> + printf '%s\n' 'no; skipping check' > >>> + sage_spkg_install_meson-python=yes > >>> ./configure: line 49870: sage_spkg_install_meson-python=yes: command > not found > >>> + test yes = yes > >>> + : > >>> + sage_use_system_meson-python=no > >>> ./configure: line 49874: sage_use_system_meson-python=no: command not > found > >>> + test xno = xno > >>> + : > >>> + sage_use_system_meson_python=yes > >>> + printf '%s\n' 'configure:49884: will use system package and not > install SPKG meson_python' > >>> + printf '%s\n' 'configure: will use system package and not install > SPKG meson_python' > >>> + > >>> > >>> On Sunday, September 17, 2023 at 1:34:35 PM UTC-7 Dima Pasechnik wrote: > > > > On Sun, Sep 17, 2023 at 7:25 PM John H Palmieri > wrote: > > > > Similar problem for me on OS X. I don't understand something: the > dependencies for scipy include meson_python, but that package is not > installed before scipy attempts to build, and fails. Running "make > meson_python" and then "make scipy" succeeds, as does "make". > > $ cat build/pkgs/scipy/dependencies > $(BLAS) gfortran numpy pybind11 cython pythran | $(PYTHON_TOOLCHAIN) > meson_python $(PYTHON) > > looks OK. So this looks like a bug in our build system > > > > > > > > > > On Saturday, September 16, 2023 at 2:59:58 PM UTC-7 Kwankyu Lee > wrote: > >> > >> Succeeded after sage -pip install meson-python. > >> > >> On Sunday, September 17, 2023 at 6:52:59 AM UTC+9 Kwankyu Lee > wrote: > >>> > >>> Incremental build failed > >>> > >>> [scipy-1.11.2] > [..] > >>> [scipy-1.11.2] scipy-1.11.2 > >>> [scipy-1.11.2] > > >>> [sagelib-10.2.beta3] Removing file or directory > /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/sagemath-standard.egg-link > >>> [sagelib-10.2.beta3] Removing pth entries from > /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/easy-install.pth: > >>> [sagelib-10.2.beta3] Removing entry: > /Users/kwankyu/GitHub/sage-dev/src > >>> [sagelib-10.2.beta3] Successfully uninstalled > sagemath-standard-10.2b3 > >>> [sagelib-10.2.beta3] Running setup.py develop for > sagemath-standard > >>> [sagelib-10.2.beta3] Running command python setup.py develop > >>> [scipy-1.11.2] Setting up build directory for scipy-1.11.2 > >>> [scipy-1.11.2] Finished extraction > >>> [scipy-1.11.2] Applying patches from ../patches... > >>> [scipy-1.11.2] Applying ../patches/numpy-include.patch > >>> [scipy-1.11.2] patching file scipy/spatial/setup.py > >>> [scipy-1.11.2] Hunk #1 succeeded at 39 (offset -1 lines). > >>> [scipy-1.11.2] Applying > ../patches/tests_no_internet_dependency.patch > >>> [scipy-1.11.2] patching file scipy/datasets/meson.build > >>> [scipy-1.11.2] > > >>> [scipy-1.11.2] Host system: > >>> [scipy-1.11.2] Darwin Helios.local 22.6.0 Darwin Kernel Version > 22.6.0: Wed Jul 5 22:21:56 PDT 2023; root:xnu-8796.141.3~6/RELEASE_X86_64 > x86_64 > >>> [scipy-1.11.2] > > >>> [scipy-1.11.2] C compiler: gcc > >>> [scipy-1.11.2] C compiler version: > >>> [scipy-1.11.2] Apple clang version 14.0.3 (clang-1403.0.22.14.1) > >>> [scipy-1.11.2] Target: x86_64-apple-darwin22.6.0 > >>> [scipy-1.11.2] Thread model: posix > >>> [scipy-1.11.2] InstalledDir: > /Library/Developer/CommandLineTools/usr/bin > >>> [scipy-1.11.2] > > >>> [scipy-1.11.2] Package 'scipy' is currently not installed > >>> [scipy-1.11.2] No legacy uninstaller found for 'scipy'; nothing > to do > >>> [scipy-1.11.2] Installing scipy-1.11.2 > >>>
Re: [sage-release] Re: Sage 10.2.beta3 released
run make pytest (or ./sage -i pytest) to install it and have it ready for Sage. (i.e. install it into Sage's venv) On Mon, Sep 18, 2023 at 9:04 AM John Cremona wrote: > > What should I do to avoid this message when running "make testlong": > > pytest is not installed in the venv, skip checking tests that rely on it > > i.e. how should I install pytest. System-wide or what? > > John > > On Mon, 18 Sept 2023 at 01:08, Matthias Köppe > wrote: >> >> I've pushed a fix to https://github.com/sagemath/sage/pull/36276 >> >> On Sunday, September 17, 2023 at 5:02:05 PM UTC-7 Matthias Köppe wrote: >>> >>> Yes, it's a bug in the build system. Running CONFIG_SHELL="bash -x" >>> ./configure >>> >>> + printf '%s\n' 'configure:49868: result: no; skipping check' >>> + printf '%s\n' 'no; skipping check' >>> + sage_spkg_install_meson-python=yes >>> ./configure: line 49870: sage_spkg_install_meson-python=yes: command not >>> found >>> + test yes = yes >>> + : >>> + sage_use_system_meson-python=no >>> ./configure: line 49874: sage_use_system_meson-python=no: command not found >>> + test xno = xno >>> + : >>> + sage_use_system_meson_python=yes >>> + printf '%s\n' 'configure:49884: will use system package and not install >>> SPKG meson_python' >>> + printf '%s\n' 'configure: will use system package and not install SPKG >>> meson_python' >>> + >>> >>> On Sunday, September 17, 2023 at 1:34:35 PM UTC-7 Dima Pasechnik wrote: On Sun, Sep 17, 2023 at 7:25 PM John H Palmieri wrote: > > Similar problem for me on OS X. I don't understand something: the > dependencies for scipy include meson_python, but that package is not > installed before scipy attempts to build, and fails. Running "make > meson_python" and then "make scipy" succeeds, as does "make". $ cat build/pkgs/scipy/dependencies $(BLAS) gfortran numpy pybind11 cython pythran | $(PYTHON_TOOLCHAIN) meson_python $(PYTHON) looks OK. So this looks like a bug in our build system > > > > On Saturday, September 16, 2023 at 2:59:58 PM UTC-7 Kwankyu Lee wrote: >> >> Succeeded after sage -pip install meson-python. >> >> On Sunday, September 17, 2023 at 6:52:59 AM UTC+9 Kwankyu Lee wrote: >>> >>> Incremental build failed >>> >>> [scipy-1.11.2] >>> [..] >>> [scipy-1.11.2] scipy-1.11.2 >>> [scipy-1.11.2] >>> [sagelib-10.2.beta3] Removing file or directory >>> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/sagemath-standard.egg-link >>> [sagelib-10.2.beta3] Removing pth entries from >>> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/easy-install.pth: >>> [sagelib-10.2.beta3] Removing entry: >>> /Users/kwankyu/GitHub/sage-dev/src >>> [sagelib-10.2.beta3] Successfully uninstalled >>> sagemath-standard-10.2b3 >>> [sagelib-10.2.beta3] Running setup.py develop for sagemath-standard >>> [sagelib-10.2.beta3] Running command python setup.py develop >>> [scipy-1.11.2] Setting up build directory for scipy-1.11.2 >>> [scipy-1.11.2] Finished extraction >>> [scipy-1.11.2] Applying patches from ../patches... >>> [scipy-1.11.2] Applying ../patches/numpy-include.patch >>> [scipy-1.11.2] patching file scipy/spatial/setup.py >>> [scipy-1.11.2] Hunk #1 succeeded at 39 (offset -1 lines). >>> [scipy-1.11.2] Applying ../patches/tests_no_internet_dependency.patch >>> [scipy-1.11.2] patching file scipy/datasets/meson.build >>> [scipy-1.11.2] >>> [scipy-1.11.2] Host system: >>> [scipy-1.11.2] Darwin Helios.local 22.6.0 Darwin Kernel Version >>> 22.6.0: Wed Jul 5 22:21:56 PDT 2023; >>> root:xnu-8796.141.3~6/RELEASE_X86_64 x86_64 >>> [scipy-1.11.2] >>> [scipy-1.11.2] C compiler: gcc >>> [scipy-1.11.2] C compiler version: >>> [scipy-1.11.2] Apple clang version 14.0.3 (clang-1403.0.22.14.1) >>> [scipy-1.11.2] Target: x86_64-apple-darwin22.6.0 >>> [scipy-1.11.2] Thread model: posix >>> [scipy-1.11.2] InstalledDir: >>> /Library/Developer/CommandLineTools/usr/bin >>> [scipy-1.11.2] >>> [scipy-1.11.2] Package 'scipy' is currently not installed >>> [scipy-1.11.2] No legacy uninstaller found for 'scipy'; nothing to do >>> [scipy-1.11.2] Installing scipy-1.11.2 >>> [scipy-1.11.2] DEPRECATION: --no-binary currently disables reading >>> from the cache of locally built wheels. In the future --no-binary will >>> not influence the wheel cache. pip 23.1
Re: [sage-release] Re: Sage 10.2.beta3 released
What should I do to avoid this message when running "make testlong": pytest is not installed in the venv, skip checking tests that rely on it i.e. how should I install pytest. System-wide or what? John On Mon, 18 Sept 2023 at 01:08, Matthias Köppe wrote: > I've pushed a fix to https://github.com/sagemath/sage/pull/36276 > > On Sunday, September 17, 2023 at 5:02:05 PM UTC-7 Matthias Köppe wrote: > >> Yes, it's a bug in the build system. Running CONFIG_SHELL="bash -x" >> ./configure >> >> + printf '%s\n' 'configure:49868: result: no; skipping check' >> + printf '%s\n' 'no; skipping check' >> + sage_spkg_install_meson-python=yes >> ./configure: line 49870: sage_spkg_install_meson-python=yes: command not >> found >> + test yes = yes >> + : >> + sage_use_system_meson-python=no >> ./configure: line 49874: sage_use_system_meson-python=no: command not >> found >> + test xno = xno >> + : >> + sage_use_system_meson_python=yes >> + printf '%s\n' 'configure:49884: will use system package and not install >> SPKG meson_python' >> + printf '%s\n' 'configure: will use system package and not install SPKG >> meson_python' >> + >> >> On Sunday, September 17, 2023 at 1:34:35 PM UTC-7 Dima Pasechnik wrote: >> >>> >>> >>> On Sun, Sep 17, 2023 at 7:25 PM John H Palmieri >>> wrote: >>> > >>> > Similar problem for me on OS X. I don't understand something: the >>> dependencies for scipy include meson_python, but that package is not >>> installed before scipy attempts to build, and fails. Running "make >>> meson_python" and then "make scipy" succeeds, as does "make". >>> >>> $ cat build/pkgs/scipy/dependencies >>> $(BLAS) gfortran numpy pybind11 cython pythran | $(PYTHON_TOOLCHAIN) >>> meson_python $(PYTHON) >>> >>> looks OK. So this looks like a bug in our build system >>> >>> >>> > >>> > >>> > >>> > On Saturday, September 16, 2023 at 2:59:58 PM UTC-7 Kwankyu Lee wrote: >>> >> >>> >> Succeeded after sage -pip install meson-python. >>> >> >>> >> On Sunday, September 17, 2023 at 6:52:59 AM UTC+9 Kwankyu Lee wrote: >>> >>> >>> >>> Incremental build failed >>> >>> >>> >>> [scipy-1.11.2] >>> [..] >>> >>> [scipy-1.11.2] scipy-1.11.2 >>> >>> [scipy-1.11.2] >>> >>> [sagelib-10.2.beta3] Removing file or directory >>> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/sagemath-standard.egg-link >>> >>> [sagelib-10.2.beta3] Removing pth entries from >>> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/easy-install.pth: >>> >>> [sagelib-10.2.beta3] Removing entry: >>> /Users/kwankyu/GitHub/sage-dev/src >>> >>> [sagelib-10.2.beta3] Successfully uninstalled >>> sagemath-standard-10.2b3 >>> >>> [sagelib-10.2.beta3] Running setup.py develop for sagemath-standard >>> >>> [sagelib-10.2.beta3] Running command python setup.py develop >>> >>> [scipy-1.11.2] Setting up build directory for scipy-1.11.2 >>> >>> [scipy-1.11.2] Finished extraction >>> >>> [scipy-1.11.2] Applying patches from ../patches... >>> >>> [scipy-1.11.2] Applying ../patches/numpy-include.patch >>> >>> [scipy-1.11.2] patching file scipy/spatial/setup.py >>> >>> [scipy-1.11.2] Hunk #1 succeeded at 39 (offset -1 lines). >>> >>> [scipy-1.11.2] Applying ../patches/tests_no_internet_dependency.patch >>> >>> [scipy-1.11.2] patching file scipy/datasets/meson.build >>> >>> [scipy-1.11.2] >>> >>> [scipy-1.11.2] Host system: >>> >>> [scipy-1.11.2] Darwin Helios.local 22.6.0 Darwin Kernel Version >>> 22.6.0: Wed Jul 5 22:21:56 PDT 2023; root:xnu-8796.141.3~6/RELEASE_X86_64 >>> x86_64 >>> >>> [scipy-1.11.2] >>> >>> [scipy-1.11.2] C compiler: gcc >>> >>> [scipy-1.11.2] C compiler version: >>> >>> [scipy-1.11.2] Apple clang version 14.0.3 (clang-1403.0.22.14.1) >>> >>> [scipy-1.11.2] Target: x86_64-apple-darwin22.6.0 >>> >>> [scipy-1.11.2] Thread model: posix >>> >>> [scipy-1.11.2] InstalledDir: >>> /Library/Developer/CommandLineTools/usr/bin >>> >>> [scipy-1.11.2] >>> >>> [scipy-1.11.2] Package 'scipy' is currently not installed >>> >>> [scipy-1.11.2] No legacy uninstaller found for 'scipy'; nothing to do >>> >>> [scipy-1.11.2] Installing scipy-1.11.2 >>> >>> [scipy-1.11.2] DEPRECATION: --no-binary currently disables reading >>> from the cache of locally built wheels. In the future --no-binary will not >>> influence the wheel cache. pip 23.1 will enforce this behaviour change. A >>> possible replacement is to use the --no-cache-dir option. You can use the >>> flag --use-feature=no-binary-enable-wheel-cache to test the upcoming >>> behaviour. Discussion can be found at >>> https://github.com/pypa/pip/issues/11453 >>> >>> [scipy-1.11.2] Processing >>>
