On Mon, 18 Sept 2023 at 09:50, Dima Pasechnik <dimp...@gmail.com> wrote:
> run > > make pytest > > (or ./sage -i pytest) > > to install it and have it ready for Sage. > (i.e. install it into Sage's venv) > Thanks Dima John > > On Mon, Sep 18, 2023 at 9:04 AM John Cremona <john.crem...@gmail.com> > wrote: > > > > What should I do to avoid this message when running "make testlong": > > > > pytest is not installed in the venv, skip checking tests that rely on it > > > > i.e. how should I install pytest. System-wide or what? > > > > John > > > > On Mon, 18 Sept 2023 at 01:08, Matthias Köppe <matthiaskoe...@gmail.com> > wrote: > >> > >> I've pushed a fix to https://github.com/sagemath/sage/pull/36276 > >> > >> On Sunday, September 17, 2023 at 5:02:05 PM UTC-7 Matthias Köppe wrote: > >>> > >>> Yes, it's a bug in the build system. Running CONFIG_SHELL="bash -x" > ./configure.... > >>> > >>> + printf '%s\n' 'configure:49868: result: no; skipping check' > >>> + printf '%s\n' 'no; skipping check' > >>> + sage_spkg_install_meson-python=yes > >>> ./configure: line 49870: sage_spkg_install_meson-python=yes: command > not found > >>> + test yes = yes > >>> + : > >>> + sage_use_system_meson-python=no > >>> ./configure: line 49874: sage_use_system_meson-python=no: command not > found > >>> + test xno = xno > >>> + : > >>> + sage_use_system_meson_python=yes > >>> + printf '%s\n' 'configure:49884: will use system package and not > install SPKG meson_python' > >>> + printf '%s\n' 'configure: will use system package and not install > SPKG meson_python' > >>> + > >>> > >>> On Sunday, September 17, 2023 at 1:34:35 PM UTC-7 Dima Pasechnik wrote: > >>>> > >>>> > >>>> > >>>> On Sun, Sep 17, 2023 at 7:25 PM John H Palmieri <jhpalm...@gmail.com> > wrote: > >>>> > > >>>> > Similar problem for me on OS X. I don't understand something: the > dependencies for scipy include meson_python, but that package is not > installed before scipy attempts to build, and fails. Running "make > meson_python" and then "make scipy" succeeds, as does "make". > >>>> > >>>> $ cat build/pkgs/scipy/dependencies > >>>> $(BLAS) gfortran numpy pybind11 cython pythran | $(PYTHON_TOOLCHAIN) > meson_python $(PYTHON) > >>>> > >>>> looks OK. So this looks like a bug in our build system > >>>> > >>>> > >>>> > > >>>> > > >>>> > > >>>> > On Saturday, September 16, 2023 at 2:59:58 PM UTC-7 Kwankyu Lee > wrote: > >>>> >> > >>>> >> Succeeded after sage -pip install meson-python. > >>>> >> > >>>> >> On Sunday, September 17, 2023 at 6:52:59 AM UTC+9 Kwankyu Lee > wrote: > >>>> >>> > >>>> >>> Incremental build failed > >>>> >>> > >>>> >>> [scipy-1.11.2] > [......................................................................] > >>>> >>> [scipy-1.11.2] scipy-1.11.2 > >>>> >>> [scipy-1.11.2] > ==================================================== > >>>> >>> [sagelib-10.2.beta3] Removing file or directory > /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/sagemath-standard.egg-link > >>>> >>> [sagelib-10.2.beta3] Removing pth entries from > /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/easy-install.pth: > >>>> >>> [sagelib-10.2.beta3] Removing entry: > /Users/kwankyu/GitHub/sage-dev/src > >>>> >>> [sagelib-10.2.beta3] Successfully uninstalled > sagemath-standard-10.2b3 > >>>> >>> [sagelib-10.2.beta3] Running setup.py develop for > sagemath-standard > >>>> >>> [sagelib-10.2.beta3] Running command python setup.py develop > >>>> >>> [scipy-1.11.2] Setting up build directory for scipy-1.11.2 > >>>> >>> [scipy-1.11.2] Finished extraction > >>>> >>> [scipy-1.11.2] Applying patches from ../patches... > >>>> >>> [scipy-1.11.2] Applying ../patches/numpy-include.patch > >>>> >>> [scipy-1.11.2] patching file scipy/spatial/setup.py > >>>> >>> [scipy-1.11.2] Hunk #1 succeeded at 39 (offset -1 lines). > >>>> >>> [scipy-1.11.2] Applying > ../patches/tests_no_internet_dependency.patch > >>>> >>> [scipy-1.11.2] patching file scipy/datasets/meson.build > >>>> >>> [scipy-1.11.2] > **************************************************** > >>>> >>> [scipy-1.11.2] Host system: > >>>> >>> [scipy-1.11.2] Darwin Helios.local 22.6.0 Darwin Kernel Version > 22.6.0: Wed Jul 5 22:21:56 PDT 2023; root:xnu-8796.141.3~6/RELEASE_X86_64 > x86_64 > >>>> >>> [scipy-1.11.2] > **************************************************** > >>>> >>> [scipy-1.11.2] C compiler: gcc > >>>> >>> [scipy-1.11.2] C compiler version: > >>>> >>> [scipy-1.11.2] Apple clang version 14.0.3 (clang-1403.0.22.14.1) > >>>> >>> [scipy-1.11.2] Target: x86_64-apple-darwin22.6.0 > >>>> >>> [scipy-1.11.2] Thread model: posix > >>>> >>> [scipy-1.11.2] InstalledDir: > /Library/Developer/CommandLineTools/usr/bin > >>>> >>> [scipy-1.11.2] > **************************************************** > >>>> >>> [scipy-1.11.2] Package 'scipy' is currently not installed > >>>> >>> [scipy-1.11.2] No legacy uninstaller found for 'scipy'; nothing > to do > >>>> >>> [scipy-1.11.2] Installing scipy-1.11.2 > >>>> >>> [scipy-1.11.2] DEPRECATION: --no-binary currently disables > reading from the cache of locally built wheels. In the future --no-binary > will not influence the wheel cache. pip 23.1 will enforce this behaviour > change. A possible replacement is to use the --no-cache-dir option. You can > use the flag --use-feature=no-binary-enable-wheel-cache to test the > upcoming behaviour. Discussion can be found at > https://github.com/pypa/pip/issues/11453 > >>>> >>> [scipy-1.11.2] Processing > /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/scipy-1.11.2/src > >>>> >>> [scipy-1.11.2] Preparing metadata (pyproject.toml): started > >>>> >>> [scipy-1.11.2] Running command Preparing metadata > (pyproject.toml) > >>>> >>> [scipy-1.11.2] Preparing metadata (pyproject.toml): finished > with status 'done' > >>>> >>> [scipy-1.11.2] ERROR: Exception: > >>>> >>> [scipy-1.11.2] Traceback (most recent call last): > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/cli/base_command.py", > line 160, in exc_logging_wrapper > >>>> >>> [scipy-1.11.2] status = run_func(*args) > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/cli/req_command.py", > line 247, in wrapper > >>>> >>> [scipy-1.11.2] return func(self, options, args) > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/commands/wheel.py", > line 170, in run > >>>> >>> [scipy-1.11.2] requirement_set = resolver.resolve(reqs, > check_supported_wheels=True) > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/resolver.py", > line 73, in resolve > >>>> >>> [scipy-1.11.2] collected = > self.factory.collect_root_requirements(root_reqs) > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", > line 491, in collect_root_requirements > >>>> >>> [scipy-1.11.2] req = self._make_requirement_from_install_req( > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", > line 453, in _make_requirement_from_install_req > >>>> >>> [scipy-1.11.2] cand = self._make_candidate_from_link( > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", > line 206, in _make_candidate_from_link > >>>> >>> [scipy-1.11.2] self._link_candidate_cache[link] = > LinkCandidate( > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", > line 297, in __init__ > >>>> >>> [scipy-1.11.2] super().__init__( > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", > line 162, in __init__ > >>>> >>> [scipy-1.11.2] self.dist = self._prepare() > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", > line 231, in _prepare > >>>> >>> [scipy-1.11.2] dist = self._prepare_distribution() > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", > line 308, in _prepare_distribution > >>>> >>> [scipy-1.11.2] return > preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", > line 491, in prepare_linked_requirement > >>>> >>> [scipy-1.11.2] return self._prepare_linked_requirement(req, > parallel_builds) > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", > line 577, in _prepare_linked_requirement > >>>> >>> [scipy-1.11.2] dist = _get_prepared_distribution( > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", > line 69, in _get_prepared_distribution > >>>> >>> [scipy-1.11.2] abstract_dist.prepare_distribution_metadata( > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/distributions/sdist.py", > line 61, in prepare_distribution_metadata > >>>> >>> [scipy-1.11.2] self.req.prepare_metadata() > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/req/req_install.py", > line 535, in prepare_metadata > >>>> >>> [scipy-1.11.2] self.metadata_directory = generate_metadata( > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/build/metadata.py", > line 35, in generate_metadata > >>>> >>> [scipy-1.11.2] distinfo_dir = > backend.prepare_metadata_for_build_wheel(metadata_dir) > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/utils/misc.py", > line 706, in prepare_metadata_for_build_wheel > >>>> >>> [scipy-1.11.2] return > super().prepare_metadata_for_build_wheel( > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", > line 189, in prepare_metadata_for_build_wheel > >>>> >>> [scipy-1.11.2] return > self._call_hook('prepare_metadata_for_build_wheel', { > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", > line 319, in _call_hook > >>>> >>> [scipy-1.11.2] raise BackendUnavailable(data.get('traceback', > '')) > >>>> >>> [scipy-1.11.2] pip._vendor.pep517.wrappers.BackendUnavailable: > Traceback (most recent call last): > >>>> >>> [scipy-1.11.2] File > "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", > line 77, in _build_backend > >>>> >>> [scipy-1.11.2] obj = import_module(mod_path) > >>>> >>> [scipy-1.11.2] File > >>>> >>> "/usr/local/Cellar/pyt...@3.10/3.10.9/Frameworks/Python.framework/Versions/3.10/lib/python3.10/importlib/__init__.py", > line 126, in import_module > >>>> >>> [scipy-1.11.2] return _bootstrap._gcd_import(name[level:], > package, level) > >>>> >>> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1050, > in _gcd_import > >>>> >>> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1027, > in _find_and_load > >>>> >>> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1004, > in _find_and_load_unlocked > >>>> >>> [scipy-1.11.2] ModuleNotFoundError: No module named 'mesonpy' > >>>> >>> [scipy-1.11.2] > >>>> >>> [scipy-1.11.2] > ******************************************************************************** > >>>> >>> [scipy-1.11.2] Error building a wheel for scipy-1.11.2 > >>>> >>> [scipy-1.11.2] > ******************************************************************************** > >>>> >>> [scipy-1.11.2] > >>>> >>> [scipy-1.11.2] real 0m0.924s > >>>> >>> [scipy-1.11.2] user 0m0.663s > >>>> >>> [scipy-1.11.2] sys 0m0.184s > >>>> >>> [scipy-1.11.2] > ************************************************************************ > >>>> >>> [scipy-1.11.2] Error installing package scipy-1.11.2 > >>>> >>> > >>>> >>> On Sunday, September 17, 2023 at 12:31:53 AM UTC+9 Volker Braun > wrote: > >>>> >>>> > >>>> >>>> As always, you can get the latest beta version from the > "develop" git branch. Alternatively, the self-contained source tarball is > at http://www.sagemath.org/download-latest.html > >>>> >>>> > >>>> >>>> > >>>> >>>> 80f6d772a15 (tag: 10.2.beta3, github/develop) Updated SageMath > version to 10.2.beta3 > >>>> >>>> f32860b2015 gh-36263: Fix setuptools version bounds in generated > `pyproject.toml` files > >>>> >>>> c95bd1440b4 gh-36260: `MPowerSeries`: Don't go through symbolics > to compute exp(0), log(1) > >>>> >>>> cac16e2fa5d gh-36256: Support more system-site packages > >>>> >>>> 238b1dc6eef gh-36255: numpy-1.25 compatibility > >>>> >>>> 486d3b99e87 gh-36250: various details in sets/disjoint_set > >>>> >>>> 357b34b55f7 gh-36249: E228 and E225 in > groups,interfaces,modules,plot > >>>> >>>> adc3df9e5c0 gh-36248: some care for unused variables in matrix/ > >>>> >>>> 413b5d679c5 gh-36247: fix E228 and E225 in categories/ > >>>> >>>> 96d249a37d9 gh-36243: ⬆️ Bump actions/checkout from 3 to 4 > >>>> >>>> 4bb48bddfa4 gh-36241: ⬆️ Bump > myrotvorets/set-commit-status-action from 1.1.7 to 2.0.0 > >>>> >>>> 191d1f97ba6 gh-36240: Fix Python package metadata generated by > `bootstrap` > >>>> >>>> 905d3c2d486 gh-36238: `sage -t`: Distinguish .pxd from .pyx in > doctest basenames > >>>> >>>> b6b50a80e96 gh-36235: support for ecl 23.9.9 > >>>> >>>> 683b05bb5a2 gh-36232: Make `min_spanning_tree` robust to > incomparable vertex labels > >>>> >>>> 8d09d156fcf gh-36231: fix typo in documentation > >>>> >>>> 33182d9feaa gh-36225: improve the use of graphs in > `sage/combinat/posets/*` > >>>> >>>> 33d6cc5a001 gh-36224: Add cycle_type() and fix to_cycle() to > SignedPermutation. > >>>> >>>> 3e6db2405df gh-36221: get rid of xrange again > >>>> >>>> 029450c8712 gh-36219: configure.ac: disable > webencodings,tinycss2 with --disable-notebook > >>>> >>>> 3ea961767e8 gh-36218: src/bin/sage-env: set > PYDEVD_DISABLE_FILE_VALIDATION=1 > >>>> >>>> f95e442cb4b gh-36213: Fix sync labels issues for step 2 going > live > >>>> >>>> e74579d32b9 gh-36212: singular: added missing #endif > >>>> >>>> 322ad22e8c8 gh-36210: configure.ac: disable mathjax with > --disable-doc > >>>> >>>> 6fe3561bbbb gh-36209: build/pkgs/ipython/dependencies: drop > jinja2 > >>>> >>>> 78efe5546db gh-36206: Remove some obsolete "six" dependencies > >>>> >>>> 1a1df6f6fbe gh-36186: Drop obsolete html5lib package > >>>> >>>> 5b2f125a842 gh-36176: build/pkgs/tox: Update, require tox >= > 4.2.7, update dependencies > >>>> >>>> 9dd8a772e53 gh-36168: `sage.groups`: Modularization fixes, `# > needs`, doctest cosmetics > >>>> >>>> 4f4fbc29184 gh-36165: Fix reduction of cusps for Gamma(N) > >>>> >>>> 45537351d7e gh-36122: Added hash function to elements of the > fundamental group of an extended affine Weyl group > >>>> >>>> 5b9137c7204 gh-35970: src/sage/combinat/affine_permutation.py: > Fix docstring markup > >>>> >>>> bbe57a4d34d gh-35964: Matroids: Don't forget to check rank in > `equals`, `is_isomorphism` > >>>> >>>> 23b1a0af6f0 gh-35875: Implementing moment angle complexes > >>>> >>>> 3a3126ffc0e gh-35767: add .basis_matrix() wrapper to quaternion > orders > >>>> >>>> d412568dff7 gh-35485: New comparison mode to lazy series and > better undefined check > >>>> >>>> 21a624a7b45 gh-35362: Implement infinite sums and products for > lazy series > >>>> >>>> 8c040276465 gh-35038: Implement Milnor fiber and Coxeter > complexes > >>>> >>>> 41031292ff1 (tag: 10.2.beta2) Updated SageMath version to > 10.2.beta2 > >>>> > > >>>> > -- > >>>> > You received this message because you are subscribed to the Google > Groups "sage-release" group. > >>>> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-release...@googlegroups.com. > >>>> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/b55a4f66-7548-47ea-b88b-95f2fb5fbf02n%40googlegroups.com > . > >> > >> -- > >> You received this message because you are subscribed to the Google > Groups "sage-release" group. > >> To unsubscribe from this group and stop receiving emails from it, send > an email to sage-release+unsubscr...@googlegroups.com. > >> To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/80b5a133-f2c7-4e2a-bc7d-ff10d00acf5an%40googlegroups.com > . > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-release+unsubscr...@googlegroups.com. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/CAD0p0K43i18P1SDVn5_FMFxeNbTCjL1XDkNUYEmV5PsD%3DoQYDQ%40mail.gmail.com > . > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/CAAWYfq1VxrUP-VRbQWkBB%3D005VvRK6PWX2VMjGmfL%2B1SyzkJ5Q%40mail.gmail.com > . > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAD0p0K6TJ_sybCn5xQ4zqUnsw8%2Bf7aO1czmwJWD17iAFRUC-bQ%40mail.gmail.com.
