What should I do to avoid this message when running "make testlong":
pytest is not installed in the venv, skip checking tests that rely on it i.e. how should I install pytest. System-wide or what? John On Mon, 18 Sept 2023 at 01:08, Matthias Köppe <matthiaskoe...@gmail.com> wrote: > I've pushed a fix to https://github.com/sagemath/sage/pull/36276 > > On Sunday, September 17, 2023 at 5:02:05 PM UTC-7 Matthias Köppe wrote: > >> Yes, it's a bug in the build system. Running CONFIG_SHELL="bash -x" >> ./configure.... >> >> + printf '%s\n' 'configure:49868: result: no; skipping check' >> + printf '%s\n' 'no; skipping check' >> + sage_spkg_install_meson-python=yes >> ./configure: line 49870: sage_spkg_install_meson-python=yes: command not >> found >> + test yes = yes >> + : >> + sage_use_system_meson-python=no >> ./configure: line 49874: sage_use_system_meson-python=no: command not >> found >> + test xno = xno >> + : >> + sage_use_system_meson_python=yes >> + printf '%s\n' 'configure:49884: will use system package and not install >> SPKG meson_python' >> + printf '%s\n' 'configure: will use system package and not install SPKG >> meson_python' >> + >> >> On Sunday, September 17, 2023 at 1:34:35 PM UTC-7 Dima Pasechnik wrote: >> >>> >>> >>> On Sun, Sep 17, 2023 at 7:25 PM John H Palmieri <jhpalm...@gmail.com> >>> wrote: >>> > >>> > Similar problem for me on OS X. I don't understand something: the >>> dependencies for scipy include meson_python, but that package is not >>> installed before scipy attempts to build, and fails. Running "make >>> meson_python" and then "make scipy" succeeds, as does "make". >>> >>> $ cat build/pkgs/scipy/dependencies >>> $(BLAS) gfortran numpy pybind11 cython pythran | $(PYTHON_TOOLCHAIN) >>> meson_python $(PYTHON) >>> >>> looks OK. So this looks like a bug in our build system >>> >>> >>> > >>> > >>> > >>> > On Saturday, September 16, 2023 at 2:59:58 PM UTC-7 Kwankyu Lee wrote: >>> >> >>> >> Succeeded after sage -pip install meson-python. >>> >> >>> >> On Sunday, September 17, 2023 at 6:52:59 AM UTC+9 Kwankyu Lee wrote: >>> >>> >>> >>> Incremental build failed >>> >>> >>> >>> [scipy-1.11.2] >>> [......................................................................] >>> >>> [scipy-1.11.2] scipy-1.11.2 >>> >>> [scipy-1.11.2] ==================================================== >>> >>> [sagelib-10.2.beta3] Removing file or directory >>> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/sagemath-standard.egg-link >>> >>> [sagelib-10.2.beta3] Removing pth entries from >>> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/easy-install.pth: >>> >>> [sagelib-10.2.beta3] Removing entry: >>> /Users/kwankyu/GitHub/sage-dev/src >>> >>> [sagelib-10.2.beta3] Successfully uninstalled >>> sagemath-standard-10.2b3 >>> >>> [sagelib-10.2.beta3] Running setup.py develop for sagemath-standard >>> >>> [sagelib-10.2.beta3] Running command python setup.py develop >>> >>> [scipy-1.11.2] Setting up build directory for scipy-1.11.2 >>> >>> [scipy-1.11.2] Finished extraction >>> >>> [scipy-1.11.2] Applying patches from ../patches... >>> >>> [scipy-1.11.2] Applying ../patches/numpy-include.patch >>> >>> [scipy-1.11.2] patching file scipy/spatial/setup.py >>> >>> [scipy-1.11.2] Hunk #1 succeeded at 39 (offset -1 lines). >>> >>> [scipy-1.11.2] Applying ../patches/tests_no_internet_dependency.patch >>> >>> [scipy-1.11.2] patching file scipy/datasets/meson.build >>> >>> [scipy-1.11.2] **************************************************** >>> >>> [scipy-1.11.2] Host system: >>> >>> [scipy-1.11.2] Darwin Helios.local 22.6.0 Darwin Kernel Version >>> 22.6.0: Wed Jul 5 22:21:56 PDT 2023; root:xnu-8796.141.3~6/RELEASE_X86_64 >>> x86_64 >>> >>> [scipy-1.11.2] **************************************************** >>> >>> [scipy-1.11.2] C compiler: gcc >>> >>> [scipy-1.11.2] C compiler version: >>> >>> [scipy-1.11.2] Apple clang version 14.0.3 (clang-1403.0.22.14.1) >>> >>> [scipy-1.11.2] Target: x86_64-apple-darwin22.6.0 >>> >>> [scipy-1.11.2] Thread model: posix >>> >>> [scipy-1.11.2] InstalledDir: >>> /Library/Developer/CommandLineTools/usr/bin >>> >>> [scipy-1.11.2] **************************************************** >>> >>> [scipy-1.11.2] Package 'scipy' is currently not installed >>> >>> [scipy-1.11.2] No legacy uninstaller found for 'scipy'; nothing to do >>> >>> [scipy-1.11.2] Installing scipy-1.11.2 >>> >>> [scipy-1.11.2] DEPRECATION: --no-binary currently disables reading >>> from the cache of locally built wheels. In the future --no-binary will not >>> influence the wheel cache. pip 23.1 will enforce this behaviour change. A >>> possible replacement is to use the --no-cache-dir option. You can use the >>> flag --use-feature=no-binary-enable-wheel-cache to test the upcoming >>> behaviour. Discussion can be found at >>> https://github.com/pypa/pip/issues/11453 >>> >>> [scipy-1.11.2] Processing >>> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/scipy-1.11.2/src >>> >>> [scipy-1.11.2] Preparing metadata (pyproject.toml): started >>> >>> [scipy-1.11.2] Running command Preparing metadata (pyproject.toml) >>> >>> [scipy-1.11.2] Preparing metadata (pyproject.toml): finished with >>> status 'done' >>> >>> [scipy-1.11.2] ERROR: Exception: >>> >>> [scipy-1.11.2] Traceback (most recent call last): >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/cli/base_command.py", >>> line 160, in exc_logging_wrapper >>> >>> [scipy-1.11.2] status = run_func(*args) >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/cli/req_command.py", >>> line 247, in wrapper >>> >>> [scipy-1.11.2] return func(self, options, args) >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/commands/wheel.py", >>> line 170, in run >>> >>> [scipy-1.11.2] requirement_set = resolver.resolve(reqs, >>> check_supported_wheels=True) >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/resolver.py", >>> line 73, in resolve >>> >>> [scipy-1.11.2] collected = >>> self.factory.collect_root_requirements(root_reqs) >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", >>> line 491, in collect_root_requirements >>> >>> [scipy-1.11.2] req = self._make_requirement_from_install_req( >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", >>> line 453, in _make_requirement_from_install_req >>> >>> [scipy-1.11.2] cand = self._make_candidate_from_link( >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", >>> line 206, in _make_candidate_from_link >>> >>> [scipy-1.11.2] self._link_candidate_cache[link] = LinkCandidate( >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >>> line 297, in __init__ >>> >>> [scipy-1.11.2] super().__init__( >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >>> line 162, in __init__ >>> >>> [scipy-1.11.2] self.dist = self._prepare() >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >>> line 231, in _prepare >>> >>> [scipy-1.11.2] dist = self._prepare_distribution() >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >>> line 308, in _prepare_distribution >>> >>> [scipy-1.11.2] return >>> preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", >>> line 491, in prepare_linked_requirement >>> >>> [scipy-1.11.2] return self._prepare_linked_requirement(req, >>> parallel_builds) >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", >>> line 577, in _prepare_linked_requirement >>> >>> [scipy-1.11.2] dist = _get_prepared_distribution( >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", >>> line 69, in _get_prepared_distribution >>> >>> [scipy-1.11.2] abstract_dist.prepare_distribution_metadata( >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/distributions/sdist.py", >>> line 61, in prepare_distribution_metadata >>> >>> [scipy-1.11.2] self.req.prepare_metadata() >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/req/req_install.py", >>> line 535, in prepare_metadata >>> >>> [scipy-1.11.2] self.metadata_directory = generate_metadata( >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/build/metadata.py", >>> line 35, in generate_metadata >>> >>> [scipy-1.11.2] distinfo_dir = >>> backend.prepare_metadata_for_build_wheel(metadata_dir) >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/utils/misc.py", >>> line 706, in prepare_metadata_for_build_wheel >>> >>> [scipy-1.11.2] return super().prepare_metadata_for_build_wheel( >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", >>> line 189, in prepare_metadata_for_build_wheel >>> >>> [scipy-1.11.2] return >>> self._call_hook('prepare_metadata_for_build_wheel', { >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", >>> line 319, in _call_hook >>> >>> [scipy-1.11.2] raise BackendUnavailable(data.get('traceback', >>> '')) >>> >>> [scipy-1.11.2] pip._vendor.pep517.wrappers.BackendUnavailable: >>> Traceback (most recent call last): >>> >>> [scipy-1.11.2] File >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", >>> line 77, in _build_backend >>> >>> [scipy-1.11.2] obj = import_module(mod_path) >>> >>> [scipy-1.11.2] File >>> >>> "/usr/local/Cellar/pyt...@3.10/3.10.9/Frameworks/Python.framework/Versions/3.10/lib/python3.10/importlib/__init__.py", >>> line 126, in import_module >>> >>> [scipy-1.11.2] return _bootstrap._gcd_import(name[level:], >>> package, level) >>> >>> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1050, in >>> _gcd_import >>> >>> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1027, in >>> _find_and_load >>> >>> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1004, in >>> _find_and_load_unlocked >>> >>> [scipy-1.11.2] ModuleNotFoundError: No module named 'mesonpy' >>> >>> [scipy-1.11.2] >>> >>> [scipy-1.11.2] >>> ******************************************************************************** >>> >>> [scipy-1.11.2] Error building a wheel for scipy-1.11.2 >>> >>> [scipy-1.11.2] >>> ******************************************************************************** >>> >>> [scipy-1.11.2] >>> >>> [scipy-1.11.2] real 0m0.924s >>> >>> [scipy-1.11.2] user 0m0.663s >>> >>> [scipy-1.11.2] sys 0m0.184s >>> >>> [scipy-1.11.2] >>> ************************************************************************ >>> >>> [scipy-1.11.2] Error installing package scipy-1.11.2 >>> >>> >>> >>> On Sunday, September 17, 2023 at 12:31:53 AM UTC+9 Volker Braun >>> wrote: >>> >>>> >>> >>>> As always, you can get the latest beta version from the "develop" >>> git branch. Alternatively, the self-contained source tarball is at >>> http://www.sagemath.org/download-latest.html >>> >>>> >>> >>>> >>> >>>> 80f6d772a15 (tag: 10.2.beta3, github/develop) Updated SageMath >>> version to 10.2.beta3 >>> >>>> f32860b2015 gh-36263: Fix setuptools version bounds in generated >>> `pyproject.toml` files >>> >>>> c95bd1440b4 gh-36260: `MPowerSeries`: Don't go through symbolics to >>> compute exp(0), log(1) >>> >>>> cac16e2fa5d gh-36256: Support more system-site packages >>> >>>> 238b1dc6eef gh-36255: numpy-1.25 compatibility >>> >>>> 486d3b99e87 gh-36250: various details in sets/disjoint_set >>> >>>> 357b34b55f7 gh-36249: E228 and E225 in >>> groups,interfaces,modules,plot >>> >>>> adc3df9e5c0 gh-36248: some care for unused variables in matrix/ >>> >>>> 413b5d679c5 gh-36247: fix E228 and E225 in categories/ >>> >>>> 96d249a37d9 gh-36243: ⬆️ Bump actions/checkout from 3 to 4 >>> >>>> 4bb48bddfa4 gh-36241: ⬆️ Bump myrotvorets/set-commit-status-action >>> from 1.1.7 to 2.0.0 >>> >>>> 191d1f97ba6 gh-36240: Fix Python package metadata generated by >>> `bootstrap` >>> >>>> 905d3c2d486 gh-36238: `sage -t`: Distinguish .pxd from .pyx in >>> doctest basenames >>> >>>> b6b50a80e96 gh-36235: support for ecl 23.9.9 >>> >>>> 683b05bb5a2 gh-36232: Make `min_spanning_tree` robust to >>> incomparable vertex labels >>> >>>> 8d09d156fcf gh-36231: fix typo in documentation >>> >>>> 33182d9feaa gh-36225: improve the use of graphs in >>> `sage/combinat/posets/*` >>> >>>> 33d6cc5a001 gh-36224: Add cycle_type() and fix to_cycle() to >>> SignedPermutation. >>> >>>> 3e6db2405df gh-36221: get rid of xrange again >>> >>>> 029450c8712 gh-36219: configure.ac: disable webencodings,tinycss2 >>> with --disable-notebook >>> >>>> 3ea961767e8 gh-36218: src/bin/sage-env: set >>> PYDEVD_DISABLE_FILE_VALIDATION=1 >>> >>>> f95e442cb4b gh-36213: Fix sync labels issues for step 2 going live >>> >>>> e74579d32b9 gh-36212: singular: added missing #endif >>> >>>> 322ad22e8c8 gh-36210: configure.ac: disable mathjax with >>> --disable-doc >>> >>>> 6fe3561bbbb gh-36209: build/pkgs/ipython/dependencies: drop jinja2 >>> >>>> 78efe5546db gh-36206: Remove some obsolete "six" dependencies >>> >>>> 1a1df6f6fbe gh-36186: Drop obsolete html5lib package >>> >>>> 5b2f125a842 gh-36176: build/pkgs/tox: Update, require tox >= 4.2.7, >>> update dependencies >>> >>>> 9dd8a772e53 gh-36168: `sage.groups`: Modularization fixes, `# >>> needs`, doctest cosmetics >>> >>>> 4f4fbc29184 gh-36165: Fix reduction of cusps for Gamma(N) >>> >>>> 45537351d7e gh-36122: Added hash function to elements of the >>> fundamental group of an extended affine Weyl group >>> >>>> 5b9137c7204 gh-35970: src/sage/combinat/affine_permutation.py: Fix >>> docstring markup >>> >>>> bbe57a4d34d gh-35964: Matroids: Don't forget to check rank in >>> `equals`, `is_isomorphism` >>> >>>> 23b1a0af6f0 gh-35875: Implementing moment angle complexes >>> >>>> 3a3126ffc0e gh-35767: add .basis_matrix() wrapper to quaternion >>> orders >>> >>>> d412568dff7 gh-35485: New comparison mode to lazy series and better >>> undefined check >>> >>>> 21a624a7b45 gh-35362: Implement infinite sums and products for lazy >>> series >>> >>>> 8c040276465 gh-35038: Implement Milnor fiber and Coxeter complexes >>> >>>> 41031292ff1 (tag: 10.2.beta2) Updated SageMath version to 10.2.beta2 >>> > >>> > -- >>> > You received this message because you are subscribed to the Google >>> Groups "sage-release" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-release...@googlegroups.com. >>> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-release/b55a4f66-7548-47ea-b88b-95f2fb5fbf02n%40googlegroups.com >>> . >>> >> -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/80b5a133-f2c7-4e2a-bc7d-ff10d00acf5an%40googlegroups.com > <https://groups.google.com/d/msgid/sage-release/80b5a133-f2c7-4e2a-bc7d-ff10d00acf5an%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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