run make pytest
(or ./sage -i pytest) to install it and have it ready for Sage. (i.e. install it into Sage's venv) On Mon, Sep 18, 2023 at 9:04 AM John Cremona <john.crem...@gmail.com> wrote: > > What should I do to avoid this message when running "make testlong": > > pytest is not installed in the venv, skip checking tests that rely on it > > i.e. how should I install pytest. System-wide or what? > > John > > On Mon, 18 Sept 2023 at 01:08, Matthias Köppe <matthiaskoe...@gmail.com> > wrote: >> >> I've pushed a fix to https://github.com/sagemath/sage/pull/36276 >> >> On Sunday, September 17, 2023 at 5:02:05 PM UTC-7 Matthias Köppe wrote: >>> >>> Yes, it's a bug in the build system. Running CONFIG_SHELL="bash -x" >>> ./configure.... >>> >>> + printf '%s\n' 'configure:49868: result: no; skipping check' >>> + printf '%s\n' 'no; skipping check' >>> + sage_spkg_install_meson-python=yes >>> ./configure: line 49870: sage_spkg_install_meson-python=yes: command not >>> found >>> + test yes = yes >>> + : >>> + sage_use_system_meson-python=no >>> ./configure: line 49874: sage_use_system_meson-python=no: command not found >>> + test xno = xno >>> + : >>> + sage_use_system_meson_python=yes >>> + printf '%s\n' 'configure:49884: will use system package and not install >>> SPKG meson_python' >>> + printf '%s\n' 'configure: will use system package and not install SPKG >>> meson_python' >>> + >>> >>> On Sunday, September 17, 2023 at 1:34:35 PM UTC-7 Dima Pasechnik wrote: >>>> >>>> >>>> >>>> On Sun, Sep 17, 2023 at 7:25 PM John H Palmieri <jhpalm...@gmail.com> >>>> wrote: >>>> > >>>> > Similar problem for me on OS X. I don't understand something: the >>>> > dependencies for scipy include meson_python, but that package is not >>>> > installed before scipy attempts to build, and fails. Running "make >>>> > meson_python" and then "make scipy" succeeds, as does "make". >>>> >>>> $ cat build/pkgs/scipy/dependencies >>>> $(BLAS) gfortran numpy pybind11 cython pythran | $(PYTHON_TOOLCHAIN) >>>> meson_python $(PYTHON) >>>> >>>> looks OK. So this looks like a bug in our build system >>>> >>>> >>>> > >>>> > >>>> > >>>> > On Saturday, September 16, 2023 at 2:59:58 PM UTC-7 Kwankyu Lee wrote: >>>> >> >>>> >> Succeeded after sage -pip install meson-python. >>>> >> >>>> >> On Sunday, September 17, 2023 at 6:52:59 AM UTC+9 Kwankyu Lee wrote: >>>> >>> >>>> >>> Incremental build failed >>>> >>> >>>> >>> [scipy-1.11.2] >>>> >>> [......................................................................] >>>> >>> [scipy-1.11.2] scipy-1.11.2 >>>> >>> [scipy-1.11.2] ==================================================== >>>> >>> [sagelib-10.2.beta3] Removing file or directory >>>> >>> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/sagemath-standard.egg-link >>>> >>> [sagelib-10.2.beta3] Removing pth entries from >>>> >>> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/easy-install.pth: >>>> >>> [sagelib-10.2.beta3] Removing entry: >>>> >>> /Users/kwankyu/GitHub/sage-dev/src >>>> >>> [sagelib-10.2.beta3] Successfully uninstalled >>>> >>> sagemath-standard-10.2b3 >>>> >>> [sagelib-10.2.beta3] Running setup.py develop for sagemath-standard >>>> >>> [sagelib-10.2.beta3] Running command python setup.py develop >>>> >>> [scipy-1.11.2] Setting up build directory for scipy-1.11.2 >>>> >>> [scipy-1.11.2] Finished extraction >>>> >>> [scipy-1.11.2] Applying patches from ../patches... >>>> >>> [scipy-1.11.2] Applying ../patches/numpy-include.patch >>>> >>> [scipy-1.11.2] patching file scipy/spatial/setup.py >>>> >>> [scipy-1.11.2] Hunk #1 succeeded at 39 (offset -1 lines). >>>> >>> [scipy-1.11.2] Applying ../patches/tests_no_internet_dependency.patch >>>> >>> [scipy-1.11.2] patching file scipy/datasets/meson.build >>>> >>> [scipy-1.11.2] **************************************************** >>>> >>> [scipy-1.11.2] Host system: >>>> >>> [scipy-1.11.2] Darwin Helios.local 22.6.0 Darwin Kernel Version >>>> >>> 22.6.0: Wed Jul 5 22:21:56 PDT 2023; >>>> >>> root:xnu-8796.141.3~6/RELEASE_X86_64 x86_64 >>>> >>> [scipy-1.11.2] **************************************************** >>>> >>> [scipy-1.11.2] C compiler: gcc >>>> >>> [scipy-1.11.2] C compiler version: >>>> >>> [scipy-1.11.2] Apple clang version 14.0.3 (clang-1403.0.22.14.1) >>>> >>> [scipy-1.11.2] Target: x86_64-apple-darwin22.6.0 >>>> >>> [scipy-1.11.2] Thread model: posix >>>> >>> [scipy-1.11.2] InstalledDir: >>>> >>> /Library/Developer/CommandLineTools/usr/bin >>>> >>> [scipy-1.11.2] **************************************************** >>>> >>> [scipy-1.11.2] Package 'scipy' is currently not installed >>>> >>> [scipy-1.11.2] No legacy uninstaller found for 'scipy'; nothing to do >>>> >>> [scipy-1.11.2] Installing scipy-1.11.2 >>>> >>> [scipy-1.11.2] DEPRECATION: --no-binary currently disables reading >>>> >>> from the cache of locally built wheels. In the future --no-binary will >>>> >>> not influence the wheel cache. pip 23.1 will enforce this behaviour >>>> >>> change. A possible replacement is to use the --no-cache-dir option. >>>> >>> You can use the flag --use-feature=no-binary-enable-wheel-cache to >>>> >>> test the upcoming behaviour. Discussion can be found at >>>> >>> https://github.com/pypa/pip/issues/11453 >>>> >>> [scipy-1.11.2] Processing >>>> >>> /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/scipy-1.11.2/src >>>> >>> [scipy-1.11.2] Preparing metadata (pyproject.toml): started >>>> >>> [scipy-1.11.2] Running command Preparing metadata (pyproject.toml) >>>> >>> [scipy-1.11.2] Preparing metadata (pyproject.toml): finished with >>>> >>> status 'done' >>>> >>> [scipy-1.11.2] ERROR: Exception: >>>> >>> [scipy-1.11.2] Traceback (most recent call last): >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/cli/base_command.py", >>>> >>> line 160, in exc_logging_wrapper >>>> >>> [scipy-1.11.2] status = run_func(*args) >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/cli/req_command.py", >>>> >>> line 247, in wrapper >>>> >>> [scipy-1.11.2] return func(self, options, args) >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/commands/wheel.py", >>>> >>> line 170, in run >>>> >>> [scipy-1.11.2] requirement_set = resolver.resolve(reqs, >>>> >>> check_supported_wheels=True) >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/resolver.py", >>>> >>> line 73, in resolve >>>> >>> [scipy-1.11.2] collected = >>>> >>> self.factory.collect_root_requirements(root_reqs) >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", >>>> >>> line 491, in collect_root_requirements >>>> >>> [scipy-1.11.2] req = self._make_requirement_from_install_req( >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", >>>> >>> line 453, in _make_requirement_from_install_req >>>> >>> [scipy-1.11.2] cand = self._make_candidate_from_link( >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/factory.py", >>>> >>> line 206, in _make_candidate_from_link >>>> >>> [scipy-1.11.2] self._link_candidate_cache[link] = LinkCandidate( >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >>>> >>> line 297, in __init__ >>>> >>> [scipy-1.11.2] super().__init__( >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >>>> >>> line 162, in __init__ >>>> >>> [scipy-1.11.2] self.dist = self._prepare() >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >>>> >>> line 231, in _prepare >>>> >>> [scipy-1.11.2] dist = self._prepare_distribution() >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/resolution/resolvelib/candidates.py", >>>> >>> line 308, in _prepare_distribution >>>> >>> [scipy-1.11.2] return >>>> >>> preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", >>>> >>> line 491, in prepare_linked_requirement >>>> >>> [scipy-1.11.2] return self._prepare_linked_requirement(req, >>>> >>> parallel_builds) >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", >>>> >>> line 577, in _prepare_linked_requirement >>>> >>> [scipy-1.11.2] dist = _get_prepared_distribution( >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/prepare.py", >>>> >>> line 69, in _get_prepared_distribution >>>> >>> [scipy-1.11.2] abstract_dist.prepare_distribution_metadata( >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/distributions/sdist.py", >>>> >>> line 61, in prepare_distribution_metadata >>>> >>> [scipy-1.11.2] self.req.prepare_metadata() >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/req/req_install.py", >>>> >>> line 535, in prepare_metadata >>>> >>> [scipy-1.11.2] self.metadata_directory = generate_metadata( >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/operations/build/metadata.py", >>>> >>> line 35, in generate_metadata >>>> >>> [scipy-1.11.2] distinfo_dir = >>>> >>> backend.prepare_metadata_for_build_wheel(metadata_dir) >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_internal/utils/misc.py", >>>> >>> line 706, in prepare_metadata_for_build_wheel >>>> >>> [scipy-1.11.2] return super().prepare_metadata_for_build_wheel( >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", >>>> >>> line 189, in prepare_metadata_for_build_wheel >>>> >>> [scipy-1.11.2] return >>>> >>> self._call_hook('prepare_metadata_for_build_wheel', { >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/wrappers.py", >>>> >>> line 319, in _call_hook >>>> >>> [scipy-1.11.2] raise BackendUnavailable(data.get('traceback', '')) >>>> >>> [scipy-1.11.2] pip._vendor.pep517.wrappers.BackendUnavailable: >>>> >>> Traceback (most recent call last): >>>> >>> [scipy-1.11.2] File >>>> >>> "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", >>>> >>> line 77, in _build_backend >>>> >>> [scipy-1.11.2] obj = import_module(mod_path) >>>> >>> [scipy-1.11.2] File >>>> >>> "/usr/local/Cellar/pyt...@3.10/3.10.9/Frameworks/Python.framework/Versions/3.10/lib/python3.10/importlib/__init__.py", >>>> >>> line 126, in import_module >>>> >>> [scipy-1.11.2] return _bootstrap._gcd_import(name[level:], >>>> >>> package, level) >>>> >>> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1050, in >>>> >>> _gcd_import >>>> >>> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1027, in >>>> >>> _find_and_load >>>> >>> [scipy-1.11.2] File "<frozen importlib._bootstrap>", line 1004, in >>>> >>> _find_and_load_unlocked >>>> >>> [scipy-1.11.2] ModuleNotFoundError: No module named 'mesonpy' >>>> >>> [scipy-1.11.2] >>>> >>> [scipy-1.11.2] >>>> >>> ******************************************************************************** >>>> >>> [scipy-1.11.2] Error building a wheel for scipy-1.11.2 >>>> >>> [scipy-1.11.2] >>>> >>> ******************************************************************************** >>>> >>> [scipy-1.11.2] >>>> >>> [scipy-1.11.2] real 0m0.924s >>>> >>> [scipy-1.11.2] user 0m0.663s >>>> >>> [scipy-1.11.2] sys 0m0.184s >>>> >>> [scipy-1.11.2] >>>> >>> ************************************************************************ >>>> >>> [scipy-1.11.2] Error installing package scipy-1.11.2 >>>> >>> >>>> >>> On Sunday, September 17, 2023 at 12:31:53 AM UTC+9 Volker Braun wrote: >>>> >>>> >>>> >>>> As always, you can get the latest beta version from the "develop" git >>>> >>>> branch. Alternatively, the self-contained source tarball is at >>>> >>>> http://www.sagemath.org/download-latest.html >>>> >>>> >>>> >>>> >>>> >>>> 80f6d772a15 (tag: 10.2.beta3, github/develop) Updated SageMath >>>> >>>> version to 10.2.beta3 >>>> >>>> f32860b2015 gh-36263: Fix setuptools version bounds in generated >>>> >>>> `pyproject.toml` files >>>> >>>> c95bd1440b4 gh-36260: `MPowerSeries`: Don't go through symbolics to >>>> >>>> compute exp(0), log(1) >>>> >>>> cac16e2fa5d gh-36256: Support more system-site packages >>>> >>>> 238b1dc6eef gh-36255: numpy-1.25 compatibility >>>> >>>> 486d3b99e87 gh-36250: various details in sets/disjoint_set >>>> >>>> 357b34b55f7 gh-36249: E228 and E225 in groups,interfaces,modules,plot >>>> >>>> adc3df9e5c0 gh-36248: some care for unused variables in matrix/ >>>> >>>> 413b5d679c5 gh-36247: fix E228 and E225 in categories/ >>>> >>>> 96d249a37d9 gh-36243: ⬆️ Bump actions/checkout from 3 to 4 >>>> >>>> 4bb48bddfa4 gh-36241: ⬆️ Bump myrotvorets/set-commit-status-action >>>> >>>> from 1.1.7 to 2.0.0 >>>> >>>> 191d1f97ba6 gh-36240: Fix Python package metadata generated by >>>> >>>> `bootstrap` >>>> >>>> 905d3c2d486 gh-36238: `sage -t`: Distinguish .pxd from .pyx in >>>> >>>> doctest basenames >>>> >>>> b6b50a80e96 gh-36235: support for ecl 23.9.9 >>>> >>>> 683b05bb5a2 gh-36232: Make `min_spanning_tree` robust to incomparable >>>> >>>> vertex labels >>>> >>>> 8d09d156fcf gh-36231: fix typo in documentation >>>> >>>> 33182d9feaa gh-36225: improve the use of graphs in >>>> >>>> `sage/combinat/posets/*` >>>> >>>> 33d6cc5a001 gh-36224: Add cycle_type() and fix to_cycle() to >>>> >>>> SignedPermutation. >>>> >>>> 3e6db2405df gh-36221: get rid of xrange again >>>> >>>> 029450c8712 gh-36219: configure.ac: disable webencodings,tinycss2 >>>> >>>> with --disable-notebook >>>> >>>> 3ea961767e8 gh-36218: src/bin/sage-env: set >>>> >>>> PYDEVD_DISABLE_FILE_VALIDATION=1 >>>> >>>> f95e442cb4b gh-36213: Fix sync labels issues for step 2 going live >>>> >>>> e74579d32b9 gh-36212: singular: added missing #endif >>>> >>>> 322ad22e8c8 gh-36210: configure.ac: disable mathjax with --disable-doc >>>> >>>> 6fe3561bbbb gh-36209: build/pkgs/ipython/dependencies: drop jinja2 >>>> >>>> 78efe5546db gh-36206: Remove some obsolete "six" dependencies >>>> >>>> 1a1df6f6fbe gh-36186: Drop obsolete html5lib package >>>> >>>> 5b2f125a842 gh-36176: build/pkgs/tox: Update, require tox >= 4.2.7, >>>> >>>> update dependencies >>>> >>>> 9dd8a772e53 gh-36168: `sage.groups`: Modularization fixes, `# needs`, >>>> >>>> doctest cosmetics >>>> >>>> 4f4fbc29184 gh-36165: Fix reduction of cusps for Gamma(N) >>>> >>>> 45537351d7e gh-36122: Added hash function to elements of the >>>> >>>> fundamental group of an extended affine Weyl group >>>> >>>> 5b9137c7204 gh-35970: src/sage/combinat/affine_permutation.py: Fix >>>> >>>> docstring markup >>>> >>>> bbe57a4d34d gh-35964: Matroids: Don't forget to check rank in >>>> >>>> `equals`, `is_isomorphism` >>>> >>>> 23b1a0af6f0 gh-35875: Implementing moment angle complexes >>>> >>>> 3a3126ffc0e gh-35767: add .basis_matrix() wrapper to quaternion orders >>>> >>>> d412568dff7 gh-35485: New comparison mode to lazy series and better >>>> >>>> undefined check >>>> >>>> 21a624a7b45 gh-35362: Implement infinite sums and products for lazy >>>> >>>> series >>>> >>>> 8c040276465 gh-35038: Implement Milnor fiber and Coxeter complexes >>>> >>>> 41031292ff1 (tag: 10.2.beta2) Updated SageMath version to 10.2.beta2 >>>> > >>>> > -- >>>> > You received this message because you are subscribed to the Google >>>> > Groups "sage-release" group. >>>> > To unsubscribe from this group and stop receiving emails from it, send >>>> > an email to sage-release...@googlegroups.com. >>>> > To view this discussion on the web visit >>>> > https://groups.google.com/d/msgid/sage-release/b55a4f66-7548-47ea-b88b-95f2fb5fbf02n%40googlegroups.com. >> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-release" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to sage-release+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-release/80b5a133-f2c7-4e2a-bc7d-ff10d00acf5an%40googlegroups.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/CAD0p0K43i18P1SDVn5_FMFxeNbTCjL1XDkNUYEmV5PsD%3DoQYDQ%40mail.gmail.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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