Hi Michael,
I see that it is passing for 3.18. The email might have been for devel, which
is still failing. You should cherry-pick the commit and bump the version for
the devel branch:
In the past I've observed similar behaviour with R compiled with support
for cairo but no pango:
https://stat.ethz.ch/pipermail/r-devel/2022-April/081587.html
Despite cairo support if no pango then the documentation in ?X11 says R
defaults to type "Xlib" instead of type "cairo" even though both
You'll have to remind them to request un-deprecation here or on the emails they
were reached out to. We will not un-deprecate until the package is fixed and
they request the package not be deprecated to prove they have an active email.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell
Hi Sun,
Yes! I was about to write the same to you hahaha
It's great news!
Best,
Pedro
On Wed, Mar 27, 2024, 15:18 Sun Wenjie wrote:
> Hi Pedro,
>
> Tilo has responded and is currently updating the DNABarcode package.
>
> Best,
> Wenjie
>
>
> From:
Le 27/03/2024 à 14:54, jesse koops a écrit :
I tried that but I found the interface awkward and there was really no
performance bonus. It was in the early phase of experimentation and I
didn't save it, so it could very well be that I got the compiler
settings wrong and simd was not used. But if
Hi Pedro,
Tilo has responded and is currently updating the DNABarcode package.
Best,
Wenjie
From: Pedro Sánchez Sánchez
Sent: Wednesday, March 20, 2024 1:58 PM
To: Kern, Lori
Cc: Sun Wenjie; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] about
I like assembler, and I do use SIMD intrinsincs in some of my code (not
R), but sparingly.
The issue is more than portability between platforms, but also portability
between processors - if you write your optimized code using AVX, it might
not take advantage of newer AVX512 cpus.
In many
I tried that but I found the interface awkward and there was really no
performance bonus. It was in the early phase of experimentation and I
didn't save it, so it could very well be that I got the compiler
settings wrong and simd was not used. But if that was the case, there
would still be the
Le 26/03/2024 à 15:51, Tomas Kalibera a écrit :
On 3/26/24 10:53, jesse koops wrote:
Hello R-package-devel,
I recently got inspired by the rcppsimdjson package to try out simd
registers. It works fantastic on my computer but I struggle to find
information on how to make it portable. It
On Wed, 27 Mar 2024 at 12:19, Ivan Krylov wrote:
> В Wed, 27 Mar 2024 11:28:17 +0100
> Alexandre Courtiol пишет:
>
> > after installing R-devel the output of
> > grDevices::dev.capabilities()$paths is FALSE, while it is TRUE for R
> > 4.3.3
>
> Your system must be missing Cairo development
Thanks, the source of digest seems especially helpful. Ironically, I
actually used only 10 or so lines with simd code in the package in a
single function that is a bottleneck. It gives a very noticable
performance boost, even with unaligned vectors, and something about
directly using processor
My package deltaCaptureC is suddenly having build problems, specifically a
problem building the vignette. It fails when attempting to display a ggplot
object in the vignette, and this seems to be due to changes in ggplot. I've
updated the .rda files for the plots and the vignette now builds
On 27 March 2024 at 08:48, jesse koops wrote:
| Thank you, I was not aware of the easy way to search CRAN. I looked at
| rcppsimdjson of course, but couldn't figure it out since it is done in
| the simdjson library if interpret it correclty, not within the R
| ecosystem and I didn't know how
I'll be in touch with Calandra privately to set up a BiocCredentials account.
Once that is established we can proceed with this request
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
В Wed, 27 Mar 2024 11:28:17 +0100
Alexandre Courtiol пишет:
> after installing R-devel the output of
> grDevices::dev.capabilities()$paths is FALSE, while it is TRUE for R
> 4.3.3
Your system must be missing Cairo development headers, making x11()
fall back to type = 'Xlib':
$ R-devel -q -s -e
On 27 March 2024 at 11:03, Prof Brian Ripley via R-devel wrote:
| On 27/03/2024 10:28, Alexandre Courtiol wrote:
| > Hi all,
| >
| > I don't know if it is a local issue on my hands or not, but after
| > installing R-devel the output of grDevices::dev.capabilities()$paths is
| > FALSE, while it
On 27/03/2024 10:28, Alexandre Courtiol wrote:
Hi all,
I don't know if it is a local issue on my hands or not, but after
installing R-devel the output of grDevices::dev.capabilities()$paths is
FALSE, while it is TRUE for R 4.3.3.
Relatedly, I have issues with plotting paths on devel.
At this
Hi all,
I don't know if it is a local issue on my hands or not, but after
installing R-devel the output of grDevices::dev.capabilities()$paths is
FALSE, while it is TRUE for R 4.3.3.
Relatedly, I have issues with plotting paths on devel.
At this stage, I simply would like to know if others
On 3/27/24 08:39, jesse koops wrote:
Of course you are correct about the portability. But since at ;least
one other CRAN package by a renowned author does it succesfully, I
figured I'd experiment first on my machine and learn about portability
later. Thank you for the links and the warning about
Thank you, I was not aware of the easy way to search CRAN. I looked at
rcppsimdjson of course, but couldn't figure it out since it is done in
the simdjson library if interpret it correclty, not within the R
ecosystem and I didn't know how that would change things. Writing R
extensions assumes a
Of course you are correct about the portability. But since at ;least
one other CRAN package by a renowned author does it succesfully, I
figured I'd experiment first on my machine and learn about portability
later. Thank you for the links and the warning about the bug. I was
aware of that, however
Thank you very much, that looks promising. Though if I look at your
congigure.ac script, also extremely daunting and far above my current
level of understanding. I guess I'll start with the autoconf manual
then.
Op di 26 mrt 2024 om 16:04 schreef Vincent Dorie :
>
> Hi Jesse,
>
> What I've done
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