.
Are there any others developing on this branch?
Best
Troels
--
Troels Emtekær Linnet
PhD student
Copenhagen University
SBiNLab, 3-0-41
Ole Maaloes Vej 5
2200 Copenhagen N
Tlf: +45 353-22083
2013/5/2 Edward d'Auvergne edw...@nmr-relax.com
Hi Troels,
Welcome to the relax mailing lists. For now
minfx
import readline
import wx
import numpy
import scipy
Best
Troels
Troels Emtekær Linnet
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2300 København S
Mobil: +45 60210234
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relax-users@gna.org
-rh5-x86_64/bin/python2.7
import relax
relax.start(profile_flag=False)
Best
Troels
Troels Emtekær Linnet
Ved kløvermarken 9, 1.th
2300 København S
Mobil: +45 60210234
2013/5/2 Edward d'Auvergne edw...@nmr-relax.com
Hi Troels,
In the future, for such questions I would recommend asking
combination to solve the
double minimum problem. But I wonder if this could be solved also
for a 750/800 MHz data acquisition?
Best
Troels Emtekær Linnet
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in the line ['protein', '75', 'L',
'75', 'N', '3.578841e+06', '6.352595e+06'] is invalid, the data is
missing.
RelaxError: No corresponding data could be found within the file.
---
Troels Emtekær Linnet
2013/6/6 Edward d'Auvergne edw...@nmr-relax.com:
Hi,
Have you had any
I think it is because that:
spectrum_id='(2,6)'
is translated to a string.
Could it be corrected, so it does similar as:
int_col=(6, 7)
Best
Troels Emtekær Linnet
2013/6/6 Troels Emtekær Linnet tlin...@gmail.com:
Hi,
No, not any luck.
And, this time I am not renaming.
Where can I find
developer you could give this a go yourself after
creating the report. This would all go into the relax trunk, and then
be ported to the relax_disp branch using svnmerge.py.
Cheers,
Edward
On 6 June 2013 15:04, Troels Emtekær Linnet tlin...@gmail.com wrote:
I think it is because
I can do it by:
Ctrl+D
Right click, Associate with a new auto analysis
Is there a relax command to open this?
best
Troels Emtekær Linnet
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-analysis is not needed at all. This just requires a few user
function calls on a data pipe, set to maybe 'relax_fit', to trigger
the issue. I hope this answers your question.
Regards,
Edward
On 6 June 2013 18:48, Troels Emtekær Linnet tlin...@gmail.com wrote:
I can do it by:
Ctrl+D
14 2.41391 10.41391
...
But what if you run relax without the flag: -l LOGFILE.txt
???
Does the cdp class contain the information?
Best
Troels
Best
Troels
Troels Emtekær Linnet
2013/6/11 Edward d'Auvergne edw...@nmr-relax.com
Hi,
I'll answer below
analysis create 4/5 different pipes
for each
fitting model.
Would relax be able to handle 500 pipes?
Here I worry about the final_state file, saving, and memory management.
Is the memory released meanwhile?
Or should I flush/delete the pipes/memory for each 1/100 run?
Best
Troels
Troels Emtekær Linnet
.
According to the manual:
http://spin.niddk.nih.gov/NMRPipe/ref/nmrpipe/rev.html
The recommendation is to do a negative Fourier Transform
| nmrPipe -fn FT -neg \
Is there a special reason for | nmrPipe -fn REV \
Best
Troels Emtekær Linnet
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If I run:
relax_disp relax_1_ini.py
relax runs through the script and exit.
Is there a way to stop after reading?
Best
Troels Emtekær Linnet
2013/8/26 Edward d'Auvergne edw...@nmr-relax.com:
Hi Troels,
You should find the answer you are after in the following link:
http://www.nmr
students in our lab, who can have a little trouble
handling linux.
It therefore contains some helper scripts, to help processing spectra.
Any comments would be appreciated. :-)
Troels Emtekær Linnet
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This is the relax
All-right.
I will de-couple scripts. :-)
For images:
http://en.wikipedia.org/wiki/Wikipedia:Picture_tutorial
Troels Emtekær Linnet
2013/8/27 Edward d'Auvergne edw...@nmr-relax.com:
Hi Troels,
For this relaxation dispersion tutorial for relax, I would suggest
including the contents
Now corrected. :-)
Is it better now?
:-)
Troels Emtekær Linnet
2013/8/27 Troels Emtekær Linnet tlin...@gmail.com:
All-right.
I will de-couple scripts. :-)
For images:
http://en.wikipedia.org/wiki/Wikipedia:Picture_tutorial
Troels Emtekær Linnet
2013/8/27 Edward d'Auvergne edw
Hi Min-Kyu.
I believe you probably need to define the right header
for the file.
ex:
Assignment w1 w2 Data Height
And see if you can fix the question marks.
568N-HN
Have a look in the test-suite for some typical definition of peaks files.
GMT+01:00 Troels Emtekær Linnet tlin...@nmr-relax.com:
Hi,
I need an efficient way to compare spin.X values between pipes.
Here X could be:
- spin.r2eff
- spin.chi2
- spin.kex
etc.
I have tried implementing the following:
for spin, mol_name, res_num, res_name, spin_id in
spin_loop
Hi Mengjun.
If you have Mavericks and are in for trying to compile yourself, then try
this guide I have written:
http://wiki.nmr-relax.com/Installation_mac_mavericks_os_x
If you are experienced linux user, and want to use scripts for
dataanalysis, this should be
the best way.
Let me know if you
,
Mengjun
Quoting Troels Emtekær Linnet tlin...@nmr-relax.com:
Hi Mengjun.
If you have Mavericks and are in for trying to compile yourself, then try
this guide I have written:
http://wiki.nmr-relax.com/Installation_mac_mavericks_os_x
If you are experienced linux user, and want to use
Dear Soumya.
Would you be able to provide the script you have used for the analysis?
Or did you use the GUI?
That could help find possible errors.
I guess that it would be something similar to:
http://www.nmr-relax.com/manual/Single_model_free_model_script_mode_sample_script.html
If you have
Dear Mengjun.
For xmgrace installation, follow this:
http://wiki.nmr-relax.com/Installation_windows_Python_x86-32_Visual_Studio_Express_for_Windows_Desktop#xmgrace_-_for_the_plotting_results_of_NMR-relax
In short.
1 ) Download and install
2) Copy qtgrace.exe to xmgrace.exe in same folder
3) Add
these files to plot in any program.
Or use the User function: Grace write, to make grace files.
Best
Troels
2014-03-03 16:33 GMT+01:00 Troels Emtekær Linnet tlin...@nmr-relax.com:
Dear Mengjun.
For xmgrace installation, follow this:
http://wiki.nmr-relax.com/Installation_windows_Python_x86
Hi Stefano.
Which version of relax are you using?
If relax is an older version, the isotope function is not introduced
You can try:
relax -v
relax -i
If relax is newer, then you probably have forgotten to tell which
isotope you are investigating. N15 ?
In the prompt, you need this:
Hi Stegano.
Can you run:
relax -s --time -t systemtest.txt
That will run the systemtest, adding time information, and both tee to
screen and to logfile systemtest.txt
Then we should be able to figure out which systemtest is failing.
2014-03-14 17:42 GMT+01:00 Stefano Luciano Ciurli
, I will send it to you.
Thanks,
Stefano
On Mar 14, 2014, at 5:31 PM, Troels Emtekær Linnet wrote:
Hi Stefano.
Which version of relax are you using?
If relax is an older version, the isotope function is not introduced
You can try:
relax -v
relax -i
If relax is newer, then you probably
Hi Stefano.
You have the mac app relax 3.5 installed ?
Then relax is only reached in the GUI i think. :-)
Those commands would be:
Tools - System information
Best
Troels
2014-03-17 10:33 GMT+01:00 Stefano Luciano Ciurli stefano.ciu...@unibo.it:
Hi Troels,
You can try:
relax -v
relax
Hi Stefano.
You have the mac app relax 3.5 installed ?
Then relax is only reached in the GUI i think. :-)
To run the systemtests, then do:
Tools - System tests
Copy paste the info from the output of the relax controller to a file.
When relax hits an error, it will show which test is wrong, and
Dear Stefano.
You are really not bugging anyone with your questions!
It is a welcome to see the interest in relax, and if you are becoming
interested and
a power user, the knowledge of relax is spread. :-)
But for being able to help you, please dont hesitate to make a bug report.
Or open the relax prompt
Ctrl+p
And write:
script(script.py)
OUT COME -
script = 'script.py'
# Python module imports.
from numpy import float64, zeros
# relax module
Hi Justin.
I guess that you trying to plot a parameter as function of residue number.
I guess that something is wrong with:
y_data_type='ref'
or
y_data_type='sat'
If you go into the spin viewer, and select a spin, you should be able to
find
the parameter which you can plot?
Best
Troels
Hi Ivanhoe.
I remember that Edward added a section to the manual about running time,
and probably somewhere on the relax mailing list that question is answered.
But it depends on how many spins, computer power, and how many CPU.
But I think that anything between a day and a week is expected
Dear Justin.
If you have R1 values measured from an experiment.
And you have R1rho intensities measured as variations of spin-lock time,
spin-lock offset and spin-lock field/power, you can perform R1rho analysis
in relax.
If we just think of model DPL94, you would in relax get fitted R20(or
Hi Peixiang.
For model selection, try this in relax.
The help section is the best you can get !
Just start relax in terminal:
relax
Then write:
relax help(relax_disp)
to see all options.
For example:
help(relax_disp.select_model)
You can find more info at the wiki:
If you find this helpful, you could maybe continue this R1rho tutorial
at the wiki?
I wrote the tutorial, because I know the learning curve is steep.
And it have helped our students in the lab since.
Best
Troels
2014-05-22 17:13 GMT+02:00 Troels Emtekær Linnet tlin...@nmr-relax.com:
Hi Peixiang
Dear Peixiang, Dear Andrew.
Just a little heads-up.
Within a week or two, we should be able to release a new version of relax.
This update has focused on speed, recasting the data to higher
dimensional numpy arrays, and
moving the multiple dot operations out of the for loops.
So we have quite
.
On 26/06/2014 09:00, Troels Emtekær Linnet wrote:
Dear Peixiang, Dear Andrew.
Just a little heads-up.
Within a week or two, we should be able to release a new version of relax.
This update has focused on speed, recasting the data to higher
dimensional numpy arrays, and
moving
then you can get some speedups. But in my hands at
least, those algorithms only tend to work well on huge matrices that are
really sparse (eg100x100 with not much over 10% of elements having entries).
On 26/06/2014 09:44, Troels Emtekær Linnet wrote:
Hi Andrew.
I am looking for a solution
.
- The relax manual can be expanded, to help future users in same situation.
Good luck!
Best
Troels Emtekær Linnet
PhD student
Copenhagen University
SBiNLab, 3-0-41
Ole Maaloes Vej 5
2200 Copenhagen N
Tlf: +45 353-22083
Lync Tlf: +45 353-30195
2014-07-31 21:47 GMT+02:00 Ryan Lo rhl
relax_disp.spin_lock_field(spectrum_id=sp_id, field=spin_lock_field_strength)
I hope this helps!
Please write back here to the mailing list, if the answer covers your question.
Good luck!
Best
Troels Emtekær Linnet
PhD student
Copenhagen University
SBiNLab, 3-0-41
Ole Maaloes Vej 5
2200 Copenhagen N
Tlf: +45 353
Dear Peixiang.
I have just discovered a bug in relax, where the 'relax_times' is not
properly loaded from the data-store and sent to the target function of
model NS R1rho 2-site.
This means that currently 'NS R1rho 2-site' can only be used for fixed
time at the moment.
This bug has no influence
, to help future users in same situation.
Good luck!
Best
Troels Emtekær Linnet
PhD student
Copenhagen University
SBiNLab, 3-0-41
Ole Maaloes Vej 5
2200 Copenhagen N
Tlf: +45 353-22083
Lync Tlf: +45 353-30195
2014-08-20 18:56 GMT+02:00 Atul Srivastava asriv...@umn.edu:
Dear Edward,
I already
, Troels Emtekær Linnet tlin...@nmr-relax.com
wrote:
[snip]
relax_disp.relax_time(spectrum_id=id, time=relax_time)
- This is used for the initial R2eff calculation, for exponential
curve fitting.
# Set the NMR field strength of the spectrum.
spectrometer.frequency(id=id, frq=H_frq
Dear Edward.
Is there a way to clear the Monte Carlo simulation data key?
I try to run some data with increasing number of Monte Carlo simulations.
Thank you.
Best
Troels
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, and this is preserved in the Monte Carlo
simulation structures as well.
Regards,
Edward
On 28 August 2014 11:14, Troels Emtekær Linnet tlin...@nmr-relax.com wrote:
Dear Edward.
Is there a way to clear the Monte Carlo simulation data key?
I try to run some data with increasing number of Monte
of conformational exchange properties.
Troels Emtekær Linnet
PhD student
Copenhagen University
SBiNLab, 3-0-41
2014-09-09 9:48 GMT+02:00 Edward d'Auvergne edw...@nmr-relax.com:
Hi Chung-ke,
Welcome to the relax mailing lists! Thanks to the hard work of one of
the relax developers - Troels Linnet
:00 Troels Emtekær Linnet tlin...@nmr-relax.com:
Hi Chung-ke.
Can you put the information about which version of relax you use?
You can in terminal do:
relax -i
and write it here.
And then there is the question if you used data from one field or two
spectrometer fields.
Fitting to one
and R20b numbers are really funky. I shall follow your suggestions
and
run the calculations with the CR72 and B14 models instead.
Cheers,
Chung-ke
On Sep 9, 2014, at 4:25 PM, Troels Emtekær Linnet
tlin...@nmr-relax.com
wrote:
Hi Chung-ke.
Can you put the information about which version
Dear Edward.
I was wondering how relax handles the error intensity analysis,
where one both specify the baseplane RMSD and and one also have partly
repeated spectrums?
For example you have recorded for 10 time series.
You measure the baseplane RMSD for each spectrum.
You have repeated
Hi.
Try just write scons
But this should only be for the source code.
The packaged versions should already have the compiled C code in it.
So this is weird.
Can you run
relax - d
and post it here?
Best
Troels
On 13 Nov 2014 22:34, Maciejewski,Mark W. ma...@uchc.edu wrote:
Hello,
I have
point before staring the
analysis.
Best
Troels
2014-11-18 11:51 GMT+01:00 Troels Emtekær Linnet tlin...@nmr-relax.com:
Dear Prem.
Welcome to the mailing list!
I guess that you mean the manual at:
http://www.nmr-relax.com/manual/Contents.html
The relaxation dispersion auto-analysis
Hi Danyun Zeng.
Try have a look on this wiki page:
http://wiki.nmr-relax.com/Model-free_analysis_single_field
Best
Troels
2015-01-28 1:13 GMT+01:00 Danyun Zeng zeng...@hotmail.com:
Hi, all,
I'm new to relax. I want to use it for modelfree analysis recently and I
only have a set of
, 3.6397883716309427])
print len(a)
print np.std(a, ddof=1)
---
500
0.105036572661
---
But the error in relax is:
cdp.mol[0].res[81].spin[0].dw_err
0.046827775338478594
Is there something I am missing here?
Best
Troels
Troels Emtekær Linnet
2015-01-14 13:05 GMT+01:00 Troels Emtekær
.
I note the same behaviour for r2.
Best
Troels
Troels Emtekær Linnet
2015-01-14 13:20 GMT+01:00 Troels Emtekær Linnet tlin...@gmail.com:
If I isolate the sim dw
cdp.mol[0].res[81].spin[0].dw_sim
Copy output from prompt to small test.py file.
---
import numpy as np
fittings.
Would this be wrong?
Best
Troels
Troels Emtekær Linnet
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Hi Sam.
Try to have a look on the wiki:
http://wiki.nmr-relax.com/Category:Tutorials
http://wiki.nmr-relax.com/Tutorial_for_Relaxation_dispersion_analysis_cpmg_fixed_time_recorded_on_varian_as_fid_interleaved
Maybe you can figure out something.
If you need more help.
Make a suppert request
Dear Christina Möller.
I am sure Edward can give you an answer to this.
I know that he is on holiday until the 7th, so he will probably first
respond after this.
Until then, I can try to give you some temporary idea's you can work with.
Beforehand, I would like to say, that I no experience with
Dear Lora.
I am interested in achieving the same thing on our small local computer
cluster.
I have read from
http://beagle.ci.uchicago.edu/using-beagle/
That you use Torque to submit jobs.
Have you succeeded in getting this to work with relax?
Best
Troels
2015-05-15 19:52 GMT+02:00 Lora
.
Thanks again!
Best
Troels
2015-05-29 11:46 GMT+02:00 Troels Emtekær Linnet tlin...@nmr-relax.com:
Dear Lora.
I am interested in achieving the same thing on our small local computer
cluster.
I have read from
http://beagle.ci.uchicago.edu/using-beagle/
That you use Torque to submit jobs
Hi relax users.
I have written a tutorial to get relax running at Google Cloud Computing.
The tutorial can be found here:
http://wiki.nmr-relax.com/Run_relax_at_Google_Cloud_Computing
Consider this as a very experimental procedure.
The Cost of running Google Cloud Computing has been rapidly
Hi.
My colleagues Kresten Lindorff-Larsen and Amelie Stein kindly helped me
find some references:
http://zhanglab.ccmb.med.umich.edu/HAAD/
http://zhanglab.ccmb.med.umich.edu/papers/2009_7.pdf
Fortran code:
http://zhanglab.ccmb.med.umich.edu/HAAD/haad.f90
Hi Rakes.
Look in the test_suite folder.
Hundreds of unit and system test is provided there.
Best
Troels
2016-05-27 14:21 GMT+02:00 Rakesh Sharma :
> Hi everyone,
> can anybody have idea that from where to get data files used in relax
> manual calculations. I am
Hi Karin.
Can you provide the header or say 10 first lines of one of the files?
Is the above the list of files used for the experiment?
Best
Troels
2016-03-25 0:47 GMT+01:00 Crowhurst, Karin A :
> Hello,
>
>
> I am new to Relax and have been trying to setup my R1
Hi.
Did you compile relax yourself?
Try compiled version of relax.
Have you tried running the systemtests?
http://wiki.nmr-relax.com/Installation_test
It looks like you are running mpirun.
Try running without.
Or look here:
http://wiki.nmr-relax.com/Run_relax_at_Google_Cloud_Computing
Hi Ashish.
Attachments to the mailserver is dropped.
Can you provide a bug report instead, at upload the file there?
https://gna.org/bugs/?func=additem=relax
Best
Troels
2017-02-22 8:56 GMT+01:00 Ashish Sethi :
> Dear Edward,
>
>
>
> I also tried running the same
ree in script mode. I didn't know if all the files
> uploaded need to have that link, so only the initial files that were
> uploaded it, have it.
> Thank you in advance for your help!
> Sincerely,
> Sam
>
> On Wed, Sep 7, 2016 at 12:41 AM, Troels Emtekær Linnet <
> tlin..
it loads, it just exits out of relax.
> Again, I don't know if this is a problem with how I wrote the script. The
> Relax_script1 is the one that I load up to run the whole thing. The model
> free script.py is just the script it reads once relax has opened up.
> Again, I can see all th
form. I can send the screenshots and the relax -i for both
> computers again. I don't know why it doesn't work the fedora 24. Do you
> know what could be causing this?
>
> Thanks again in advance
>
> On Tue, Sep 13, 2016 at 9:32 PM, Troels Emtekær Linnet <
> tlin.
n specified.
>>
>> Sincerely,
>> Sam
>>
>> On Mon, Sep 26, 2016 at 2:19 PM, Mahdi, Sam <sam.mahdi@my.csun.edu>
>> wrote:
>>
>>> Hi Troels,
>>>
>>> I have attempted the fix for running on a multi-processor platform by
>>> creatin
;>>
>>> I have attempted the fix for running on a multi-processor platform by
>>> creating the script you told me too, and I still got the same result. I
>>> have uploaded a screenshot that shows again, relax is running in the
>>> background, but there is
To test the speed difference between script and GUI,
you could try to run the full test-suite through the terminal or
inside the GUI.
That should give you a clue about time difference.
2016-09-28 20:32 GMT+02:00 Troels Emtekær Linnet <tlin...@nmr-relax.com>:
> If you get differen
ordinate set has not been specified
>> By removing the extra N, all the text for the 3D location (the
>> co-ordinates) for the HN were shifted a space (no longer aligned). Once I
>> aligned them all, relax was able to read all the spins. So its working now.
>> I'm currently run
2:43 PM, Troels Emtekær Linnet <
> tlin...@nmr-relax.com
> <javascript:_e(%7B%7D,'cvml','tlin...@nmr-relax.com');>> wrote:
>
>> Hi Sam.
>>
>> Akk you PI to run this:
>>
>> sudo -- sh -c 'setenv MPICC /usr/lib64/openmpi-1.10/bin/mpicc; pip
>>
--report-bindings -np 2 python --version
> Python 2.7.5
> Python 2.7.5
>
> crowlab: [~]>
> crowlab: [~]> echo "> mpirun --report-bindings -np 2 /usr/bin/env python
> --version"; mpirun --report-bindings -np 2 /usr/bin/env python --version;
> echo ""
i info. I already have minfx 1.0.12 with
> 4.0.2. But I can't open relax on multi processor platform for either
> version.
>
> On Mon, Sep 19, 2016 at 10:47 AM, Troels Emtekær Linnet <
> tlin...@nmr-relax.com> wrote:
>
>> Please upgrade!
>>
>> Name
grid_search
> model_lower, model_upper, model_inc = grid_setup(lower, upper, inc,
> verbosity=verbosity, skip_preset=skip_preset)
> File "/home/sam2/relax-4.0.2/pipe_control/minimise.py", line 341, in
> grid_setup
> elif values[i] in [None, {}, []]:
> IndexErro
that wouldn't change any of the calculations
> correct? I never have since I assumed relax would just ignore all the amino
> acids I don't have data for, but it may help increase the speed of my
> calculations if I just tell relax to just ignore the spins from the start.
>
> Sincerel
s
>> correct? I never have since I assumed relax would just ignore all the amino
>> acids I don't have data for, but it may help increase the speed of my
>> calculations if I just tell relax to just ignore the spins from the start.
>>
>> Sincerely,
>> Sam
>
On Tue, Sep 20, 2016 at 9:15 AM, Troels Emtekær Linnet <
> tlin...@nmr-relax.com> wrote:
>
>> Hi Sam.
>>
>> On
>> https://gna.org/bugs/?25084
>>
>> I cannot open the file.?
>>
>> In the meantime, try to specify the full path to relax. Not
nd the script file
> I've been using for a total of 9 files that need to be uploaded. Is there a
> way to increase the amount I can upload, or can I upload more after the
> initial submission?
>
> On Mon, Sep 5, 2016 at 2:46 AM, Troels Emtekær Linnet <
> tlin...@nmr-relax.
Hi Troels,
>>>
>>> I have attempted the fix for running on a multi-processor platform by
>>> creating the script you told me too, and I still got the same result. I
>>> have uploaded a screenshot that shows again, relax is running in the
>>> background, but ther
Sam.
All points to:
"./relax" is NOT calling relax in the current folder.
It is because the command "mpirun" is running it.
Please provide the FULL path to relax.
I think I have written this before. ;)
Best
Troels
2016-09-30 19:24 GMT+02:00 Mahdi, Sam :
>
1.
Mpi4py 2.0.0 process 1 of 2 on instance-1.
[tlinnet@instance-1 ~]$ mpirun --np 2 relax_4.0.2 --multi='mpi4py' --version
relax 4.0.2
2016-10-03 12:39 GMT+02:00 Troels Emtekær Linnet <tlin...@nmr-relax.com>:
> Hi Sam.
>
> The commands reflect the BASH shell and not TCSH.
> Thats w
ion of
> relax (the other one I have is 2.2.5) and the older version of openmpi, and
> attempt to run it then? It would be a lot easier for me to directly tell my
> PI to simply remove a file, or update one, then to attempt to troubleshoot
> with them.
>
> Sincerely,
> Sam
> Hi Troels,
>
> I attempted the full path
> mpirun -np 5 ~/relax-4.0.2/relax --multi="mpi4py" -v
> and still got the same result. No output.
>
> Sincerely,
> Sam
>
> On Fri, Sep 30, 2016 at 11:43 AM, Troels Emtekær Linnet <
> tlin...@nmr-relax.com> w
du>:
> I get the same results with the full path mpirun -np 5 ~/relax-4.0.2/relax
> --multi="mpi4py" -v
> Still no output.
>
> Sincerely,
> Sam
>
> On Fri, Sep 30, 2016 at 10:39 AM, Troels Emtekær Linnet <
> tlin...@nmr-relax.com> wrote:
>
&g
e know!
>
> Sincerely,
> Sam
>
>
> On Fri, Sep 30, 2016 at 2:23 PM, Troels Emtekær Linnet <
> tlin...@nmr-relax.com> wrote:
>
>> Hi Sam.
>>
>> I am trying to setup myself on Google Cloud Platform.
>>
>> Here I setting up for a Redhat 6 dis
-01 0:22 GMT+02:00 Troels Emtekær Linnet <tlin...@nmr-relax.com>:
> Hi Sam.
>
> Can you try:
> mpirun --version
>
> Thanks
>
> 2016-10-01 0:00 GMT+02:00 Mahdi, Sam <sam.mahdi@my.csun.edu>:
>
>> Hi Troels,
>>
>> Here is a list of the
, but there is no output for relax, nor can I input any commands.
> The only output I recieve is this:
> Running relax with NP=$NPROC+8|bc in multi-processor mode
>
> And any command I type in after that gets no response.
>
> Sincerely,
> Sam
>
>
> On Sun, Sep 25,
16 at 1:30 PM, Mahdi, Sam <sam.mahdi@my.csun.edu>
>> wrote:
>>
>>> Hi Troels,
>>>
>>> An update on protein number 1: I have successfully resolved the problem.
>>> Initially the pdb file had HN instead of just H for the backbone hydrogens.
>>
t = "crowlab: [%c]> "'
> alias cwdcmd 'setprompt'
> setprompt
>endif
>
> Also, the 2nd command gave me no responce.
> crowlab: [~]> alias get 'set noglob; wget http://svn.gna.org/viewcvs/*
> checkout*/relax/trunk/devel_scripts/openmpi_test_install_
Hi Sahil.
Try the tutorials listed here:
http://wiki.nmr-relax.com/Category:Tutorials
http://wiki.nmr-relax.com/Tutorial_for_the_relaxation_dispersion_auto-analysis_in_the_GUI
http://wiki.nmr-relax.com/Tutorial_for_model-free_analysis_sam_mahdi
http://wiki.nmr-relax.com/Manual
I can get access
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