Plugin ManageR was uninstalled and then I wrote command import rpy2 as rpy2,
answer:
import rpy2 as rpy2
import rpy2 as rpy2
import rpy2.robjects as ro
print ro.r.require(adehabitat)
Traceback (most recent call last):
File "<input>", line 1, in <module>
NameError: name 'adehabitat' is not defined
----- Original Message -----
From: "Anne Ghisla" <a.ghi...@gmail.com>
To: <blackday...@gmail.com>
Cc: "Animal Movement" <animov@faunalia.it>
Sent: Sunday, October 03, 2010 5:17 PM
Subject: Re: [AniMov] problem with instalation of adehabitat
On Sun, Oct 3, 2010 at 4:55 PM, <blackday...@gmail.com> claviota:
Ok,
I wrote the command: require(adehabitat), then I obtained message: >
require(adehabitat)
Loading required package: adehabitat
Loading required package: ade4
Attaching package: 'ade4'
The following object(s) are masked from 'package:base':
within
This package requires ade4 to be installed
Type:
demo(rastermaps) for demonstration of raster map analysis
demo(homerange) for demonstration of home-range estimation
demo(managltraj) for demonstration of animals trajectory management
demo(analysisltraj) for demonstration of animals trajectory analysis
demo(nichehs) for demonstration of niche/habitat selection analysis
Loading required package: gpclib
General Polygon Clipper Library for R (version 1.5-1)
Type 'class ? gpc.poly' for help
great, so it works in R.
Then I wrote command to the Python console:
import rpy2 as rpy2
answer from Python:
Pri súšťaní kódu v Pythone nastala chyba:
Traceback (most recent call last):
File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2110,
in commandOutput
self.appendText(unicode(output))
File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2057,
in appendText
cursor = self.textCursor()
RuntimeError: underlying C/C++ object has been deleted
Puzzling. Why is manageR interfering? Try to disable it via Manage
Plugins and rerun the command.
There are already a lot of variables in the problem...
thanks for testing,
regards,
Anne
Verzia Pythonu:
2.5.2 (r252:60911, Feb 21 2008, 13:11:45) [MSC v.1310 32 bit (Intel)]
QGIS version:
1.5.0-Tethys Tethys, 13923M
Cesta k Pythonu: ['C:/PROGRA~1/QUANTU~1/apps/qgis/./python',
'C:\\Users\\Vlado/.qgis/python', 'C:\\Users\\Vlado/.qgis/python/plugins',
'C:/PROGRA~1/QUANTU~1/apps/qgis/./python/plugins',
'C:\\PROGRA~1\\QUANTU~1\\apps\\gdal-16\\pymod', 'C:\\Program
Files\\Quantum
GIS Tethys', 'C:\\PROGRA~1\\QUANTU~1\\bin\\python25.zip',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\DLLs',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\plat-win',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\lib-tk',
'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\bin',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32\\lib',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\Pythonwin',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\wx-2.8-msw-unicode',
u'C:/Users/Vlado/.qgis//python/plugins',
'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\python\\plugins\\fTools\\tools',
'/usr/share/qgis/python', '.']
command import rpy2.robjects as ro
answer:
Pri súšťaní kódu v Pythone nastala chyba:
Traceback (most recent call last):
File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2110,
in commandOutput
self.appendText(unicode(output))
File "C:\Users\Vlado/.qgis/python/plugins\manageR\manageR.py", line 2057,
in appendText
cursor = self.textCursor()
RuntimeError: underlying C/C++ object has been deleted
Verzia Pythonu:
2.5.2 (r252:60911, Feb 21 2008, 13:11:45) [MSC v.1310 32 bit (Intel)]
QGIS version:
1.5.0-Tethys Tethys, 13923M
Cesta k Pythonu: ['C:/PROGRA~1/QUANTU~1/apps/qgis/./python',
'C:\\Users\\Vlado/.qgis/python', 'C:\\Users\\Vlado/.qgis/python/plugins',
'C:/PROGRA~1/QUANTU~1/apps/qgis/./python/plugins',
'C:\\PROGRA~1\\QUANTU~1\\apps\\gdal-16\\pymod', 'C:\\Program
Files\\Quantum
GIS Tethys', 'C:\\PROGRA~1\\QUANTU~1\\bin\\python25.zip',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\DLLs',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\plat-win',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\lib-tk',
'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\bin',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\win32\\lib',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\Pythonwin',
'C:\\PROGRA~1\\QUANTU~1\\apps\\Python25\\lib\\site-packages\\wx-2.8-msw-unicode',
u'C:/Users/Vlado/.qgis//python/plugins',
'C:\\PROGRA~1\\QUANTU~1\\apps\\qgis\\python\\plugins\\fTools\\tools',
'/usr/share/qgis/python', '.']
Vlado
----- Original Message ----- From: "Anne Ghisla" <a.ghi...@gmail.com>
To: <blackday...@gmail.com>
Cc: "Animal Movement" <animov@faunalia.it>
Sent: Sunday, October 03, 2010 4:14 PM
Subject: Re: [AniMov] problem with instalation of adehabitat
On Sun, Oct 3, 2010 at 3:50 PM, <blackday...@gmail.com> wrote:
Hi Anne,
sorry, but I forgot send information about my system... System:
- Windows Vista - OS
- QGIS version - 1.5.0 Tethys
- how did you install QGIS - standalone installer
- R version - 2.11.1
- adehabitat version: see - I dont know... But I install adehabitat
from
Slovakia server via R - install packages
- Python version - I installed Python 3.1.2 program
Please help me with this installation, I use Arcview 3 with Animal
Movement
extension for analyses, but I prefer opensource solution ... :-)
R 2.11 and Python 3. are untested so far; actually, the standalone
QGIS carries its own Python so there is no problem on this side.
you can test this code into R console:
require(adehabitat)
and see if it loads the package correctly.
If it doesn't, it's a R/adehabitat issue. Please post details (see
sessionInfo() function )
If R loads adehabitat, pass to QGIS Python Console (last item in
Plugins menu) and type:
import rpy2 as rpy2
import rpy2.robjects as ro
print ro.r.require('adehabitat')
let us know if there are any errors there. If so, please post the
error messages.
regards,
Anne
Best wishes,
Vlado Nemcek
----- Original Message ----- From: "Anne Ghisla" <a.ghi...@gmail.com>
To: <blackday...@gmail.com>; "Animal Movement" <animov@faunalia.it>
Sent: Sunday, October 03, 2010 12:15 PM
Subject: Re: [AniMov] problem with instalation of adehabitat
On Sat, 2010-10-02 at 17:06 +0200, blackday...@gmail.com wrote:
Dear users of quantum GIS,
I have a problem with installation of adehabitat on my computer. I
download and install animove and R to the PC. But when I want
calculate the MCP or kernel polygon, then my PC put up the message -
R error (please consult its documentation) is:
Error in function (x, method = c("mcp", "href", "lscv", "hadj",
"clusthr", :
This procedure requires adehabitat to be installed
But I have R and adehabitat - I install and download adehabitat from
server with R... Please can you write me detailed installation of
adehabitat - step by step...
Hi Vlado,
we would help you right now but you didn't tell us:
- your operating system
- QGIS version
- how did you install QGIS (source, binary package, OSGeo4W,
standalone)
- R version
- adehabitat version: see
http://lists.faunalia.it/pipermail/animov/2010-September/000674.html
- Python version
that is important, each platform has its own answers:
http://www.qgis.org/wiki/HomeRange_plugin#Installation_requirements_and_tested_platforms
There are plenty of installation notes in the wiki and in the archives
of this mailing list. Of course if your problem is not covered, send
the
list a mail with the details listed above, or better fill a ticket into
https://www.faunalia.it/animove/trac/
regards,
anne
--
http://wiki.osgeo.org/wiki/Anne_Ghisla
--
http://gis.fem-environment.eu/anne-ghisla/
--
http://gis.fem-environment.eu/anne-ghisla/
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