>> I would say, use /usr/share/www/ (or similar) for static/php files, and provide proper configuration >> files that set the correct Alias and Directory directives for popular servers like apache and >> lighttpd. Users can then use Include directives (in case of apache) to load those confighuration
>>  files and enable the web app.

It is good idea, but it needs patching for most of webapps because of webapps configs should be in /etc and user data - in /var by default.

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