Hi Henrik, I read the following thread in the archive (http://groups.google.com/ group/aroma-affymetrix/msg/dc6eda9aca987a29) where the you guys discussed how to modify the plotting functions when generating the Chromosome Explorer plots for CN segmentation results.
A quote from the post says: "I modified the plotting functions reducing the line width for regions to lwd=2 and raw CN pointsize to ces=0.3. Now they look much better...". This is also something what I am trying to do, but I don't seem to be able to find these "plotting functions" and am not sure on how to override them. Just to give you a bit of the background on why I am trying to do this: I am trying to run "aroma.cn" on a large set of genotyping array data on an linux cluster. Somehow the plots generated under linux look far worse than those generated under Windows. For example, each raw CN data point is much bigger and the segmentation lines are also thicker. I tried different PNG devices but still cannot get this resolved. So now I am thinking of modifying the plotting functions to make the points smaller and line thinner ... Thank you very much for your help on this. Best, Kai -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
