Dear All, I have recently upgraded to the latest version of aroma.affymetrix and am experiencing problems running the code below
>csCancer <- AffymetrixCelSet$byName(“project1”,cdf=cdf) >csNormals <- AffymetrixCelSet$byName(“JPT”,cdf=cdf) >csR <- append(csCancer, csNormals); project1 and JPT are datasets in the rawData directory. I get the following error: Error in base::append(this$files, files, ...) : unused argument(s) (other = NA) This code ran okay in the previous version of aroma and I wondered if the append function worked differently in the new version of aroma? sessionInfo() R version 2.12.2 (2011-02-25) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices datasets utils methods base other attached packages: [1] sfit_0.1.9 aroma.affymetrix_2.0.0 aroma.apd_0.1.8 [4] affxparser_1.22.1 R.huge_0.2.2 aroma.core_2.0.0 [7] aroma.light_1.18.3 matrixStats_0.2.2 R.rsp_0.4.2 [10] R.cache_0.4.0 R.filesets_0.9.2 digest_0.4.2 [13] R.utils_1.6.3 R.oo_1.7.5 R.methodsS3_1.2.1 Many thanks Ajanthah This email may contain information that is privileged, confidential or otherwise protected from disclosure. It must not be used by, or its contents copied or disclosed to, persons other than the addressee. If you have received this email in error please notify the sender immediately and delete the email. This message has been scanned for viruses. -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
