Hi,
I've located the problem and fixed it. I've made a patch available
that you can use until the next package release is available. To
install the patch, just do:
source("http://aroma-project.org/hbLite.R";);
hbInstall("aroma.affymetrix");
/Henrik
On Thu, Mar 10, 2011 at 10:01 AM, Henrik Bengtsson
<henrik.bengts...@aroma-project.org> wrote:
> Thanks for reporting this. I'll fix it asap. In the meanwhile, here
> is an ad hoc patch:
>
> appendT <- function(cs1, cs2, ...) {
> files <- append(as.list(cs1), as.list(cs2));
> newInstance(cs1, files);
> }
>
> Then
>
> csR <- appendT(csCancer, csNormals);
>
> should work.
>
> /Henrik
>
>
> On Thu, Mar 10, 2011 at 9:52 AM, Ajanthah Sangaralingam
> <a.sangaralin...@qmul.ac.uk> wrote:
>> Dear All,
>>
>> I have recently upgraded to the latest version of aroma.affymetrix and am
>> experiencing problems running the code below
>>
>>>csCancer <- AffymetrixCelSet$byName(“project1”,cdf=cdf)
>>>csNormals <- AffymetrixCelSet$byName(“JPT”,cdf=cdf)
>>>csR <- append(csCancer, csNormals);
>>
>> project1 and JPT are datasets in the rawData directory.
>>
>> I get the following error:
>>
>> Error in base::append(this$files, files, ...) :
>> unused argument(s) (other = NA)
>>
>>
>> This code ran okay in the previous version of aroma and I wondered if the
>> append function worked differently in the new version of aroma?
>>
>>
>> sessionInfo()
>> R version 2.12.2 (2011-02-25)
>> Platform: x86_64-unknown-linux-gnu (64-bit)
>>
>> locale:
>> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
>> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
>> [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
>> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
>> [9] LC_ADDRESS=C LC_TELEPHONE=C
>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] stats graphics grDevices datasets utils methods base
>>
>> other attached packages:
>> [1] sfit_0.1.9 aroma.affymetrix_2.0.0 aroma.apd_0.1.8
>> [4] affxparser_1.22.1 R.huge_0.2.2 aroma.core_2.0.0
>> [7] aroma.light_1.18.3 matrixStats_0.2.2 R.rsp_0.4.2
>> [10] R.cache_0.4.0 R.filesets_0.9.2 digest_0.4.2
>> [13] R.utils_1.6.3 R.oo_1.7.5 R.methodsS3_1.2.1
>>
>> Many thanks
>>
>> Ajanthah
>>
>>
>>
>>
>>
>>
>>
>>
>>
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>> --
>> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
>> version of the package, 2) to report the output of sessionInfo() and
>> traceback(), and 3) to post a complete code example.
>>
>>
>> You received this message because you are subscribed to the Google Groups
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>>
>
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe and other options, go to http://www.aroma-project.org/forum/
