This time it does not complain anything towards the end of install script. However, upon restart R, the problem persists ......
<end of install script starts> downloaded 21 Kb trying URL 'http://www.braju.com/R//patches/aroma.core/20110227/ RasterImage.R' Content type 'text/plain' length 13378 bytes (13 Kb) opened URL ================================================== downloaded 13 Kb Patching /root/.Rpatches/aroma.core/20110227/Image.EXTS.R Patching /root/.Rpatches/aroma.core/20110227/RasterImage.R ############################################################ # # # Packages installed/updated. Please restart R. # # # ############################################################ > q() Save workspace image? [y/n/c]: n [root@I36513 ~]# R R version 2.10.1 (2009-12-14) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("aroma.affymetrix") Error in library("aroma.affymetrix") : there is no package called 'aroma.affymetrix' <end of install script and error message upon restarting R> On Mar 17, 2:04 pm, Henrik Bengtsson <henrik.bengts...@aroma- project.org> wrote: > Hi. > > > > On Wed, Mar 16, 2011 at 10:42 PM, AC <ayfch...@gmail.com> wrote: > > Patching /root/.Rpatches/aroma.core/20110227/Image.EXTS.R > > trying URL 'http://www.braju.com/R//patches/aroma.core/20110227/ > > Image.EXTS.R' > > Content type 'text/plain' length 22319 bytes (21 Kb) > > opened URL > > ================================================== > > downloaded 21 Kb > > > trying URL 'http://www.braju.com/R//patches/aroma.core/20110227/ > > RasterImage' > > ############################################################ > > # # > > # Packages installed/updated. Please restart R. # > > # # > > ############################################################ > > Warning message: > > In download.file(url, pathname, cacheOK = FALSE) : > > cannot open: HTTP status was '404 Not Found' > > Thanks for reporting this; there was a type in the "patch installer" - > it dropped the file extension for that file. It has been fixed now > (you probably have to restart R to avoid picking up a cached version). > > > > > I tried to install Aroma.Affymetrix and encountered the few lines > > above towards the end of my installation. > > > Subsequent attempts after restarting R, and trying to load > > library("aroma.affymetrix") > > > leads to > > >> library("aroma.affymetrix") > > Error in base::library(...) : > > there is no package called 'aroma.affymetrix' > > This puzzles me though, because aroma.affymetrix should have been > installed (and it is independent of the patch bug). Please restart R > and retry: > > source("http://aroma-project.org/hbLite.R";); > hbInstall("aroma.affymetrix"); > > Does it work now? > > /Henrik > > > > > It seems this does not exist or its server is down > > > 'http://www.braju.com/R//patches/aroma.core/20110227/RasterImage' > > > Please advice. > > > Thank you > > > -- > > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > > version of the package, 2) to report the output of sessionInfo() and > > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > > "aroma.affymetrix" group with websitehttp://www.aroma-project.org/. > > To post to this group, send email to aroma-affymetrix@googlegroups.com > > To unsubscribe and other options, go tohttp://www.aroma-project.org/forum/ -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
