Hi. On Thu, Mar 17, 2011 at 1:09 AM, AC <ayfch...@gmail.com> wrote: > This time it does not complain anything towards the end of install > script. > > However, upon restart R, the problem persists ...... > > <end of install script starts>
Look more carefully at the output generated - I am sure that there are *error* message when it tries to install aroma.affymetrix. ...and the reason is that you are using a too old version of R; aroma.affymetrix requires R v2.11.0 or newer. You should update to the latest version (R v2.12.2). /Henrik > > downloaded 21 Kb > > trying URL 'http://www.braju.com/R//patches/aroma.core/20110227/ > RasterImage.R' > Content type 'text/plain' length 13378 bytes (13 Kb) > opened URL > ================================================== > downloaded 13 Kb > > Patching /root/.Rpatches/aroma.core/20110227/Image.EXTS.R > Patching /root/.Rpatches/aroma.core/20110227/RasterImage.R > ############################################################ > # # > # Packages installed/updated. Please restart R. # > # # > ############################################################ >> q() > Save workspace image? [y/n/c]: n > [root@I36513 ~]# R > > R version 2.10.1 (2009-12-14) > Copyright (C) 2009 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. > >> library("aroma.affymetrix") > Error in library("aroma.affymetrix") : > there is no package called 'aroma.affymetrix' > > > <end of install script and error message upon restarting R> > > > > > On Mar 17, 2:04 pm, Henrik Bengtsson <henrik.bengts...@aroma- > project.org> wrote: >> Hi. >> >> >> >> On Wed, Mar 16, 2011 at 10:42 PM, AC <ayfch...@gmail.com> wrote: >> > Patching /root/.Rpatches/aroma.core/20110227/Image.EXTS.R >> > trying URL 'http://www.braju.com/R//patches/aroma.core/20110227/ >> > Image.EXTS.R' >> > Content type 'text/plain' length 22319 bytes (21 Kb) >> > opened URL >> > ================================================== >> > downloaded 21 Kb >> >> > trying URL 'http://www.braju.com/R//patches/aroma.core/20110227/ >> > RasterImage' >> > ############################################################ >> > # # >> > # Packages installed/updated. Please restart R. # >> > # # >> > ############################################################ >> > Warning message: >> > In download.file(url, pathname, cacheOK = FALSE) : >> > cannot open: HTTP status was '404 Not Found' >> >> Thanks for reporting this; there was a type in the "patch installer" - >> it dropped the file extension for that file. It has been fixed now >> (you probably have to restart R to avoid picking up a cached version). >> >> >> >> > I tried to install Aroma.Affymetrix and encountered the few lines >> > above towards the end of my installation. >> >> > Subsequent attempts after restarting R, and trying to load >> > library("aroma.affymetrix") >> >> > leads to >> >> >> library("aroma.affymetrix") >> > Error in base::library(...) : >> > there is no package called 'aroma.affymetrix' >> >> This puzzles me though, because aroma.affymetrix should have been >> installed (and it is independent of the patch bug). Please restart R >> and retry: >> >> source("http://aroma-project.org/hbLite.R";); >> hbInstall("aroma.affymetrix"); >> >> Does it work now? >> >> /Henrik >> >> >> >> > It seems this does not exist or its server is down >> >> > 'http://www.braju.com/R//patches/aroma.core/20110227/RasterImage' >> >> > Please advice. >> >> > Thank you >> >> > -- >> > When reporting problems on aroma.affymetrix, make sure 1) to run the >> > latest version of the package, 2) to report the output of sessionInfo() >> > and traceback(), and 3) to post a complete code example. >> >> > You received this message because you are subscribed to the Google Groups >> > "aroma.affymetrix" group with websitehttp://www.aroma-project.org/. >> > To post to this group, send email to aroma-affymetrix@googlegroups.com >> > To unsubscribe and other options, go tohttp://www.aroma-project.org/forum/ > > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
