Hi, I am using multiple sample groups based on Human Exon 1.0 ST array data. However, I will not be comparing differential expression between groups, but rather trying to identify the occurrence of alternative splicing common across all groups.
What algorithm is best suited for this? I was eyeing MADS (its a better version of SI?), but am unsure if FIRMA can also do this for me. I am confident I couldn't use an algorithm like MIDAS which uses group comparisons. Any advice would be greatly appreciated. Thank you for your time, James Ross -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
