I feel it might be better to post my question in this thread, as I have
encountered the same error.
I've downloaded ufl, ugp, and acs files from AROMA SNP6 webpage, and the
Full cdf file from Affymetrix. And I still got the same kind error NT_CMU
got for "getGenomeInformation".
Could you please give me a hint, where should I look for? Thanks!
On Monday, June 18, 2012 4:58:19 PM UTC-4, NT_CMU wrote:
>
> Hi
>
> I'm trying to run the command "doCRMAv2", and i get these errors. Let me
> know what the problem is, if any of you have encountered this before. I
> thought i did not have some library installed but, i have both ACNE and
> aroma.affymetrix working properly.
>
> > ds <- doCRMAv2("LeeAV_2012",chipType="GenomeWideSNP_6,Full")
> Error in getGenomeInformation.AffymetrixCdfFile(cdf) :
> [2012-06-18 16:55:10] Exception: Failed to retrieve genome information for
> this chip type: GenomeWideSNP_6
>
> at #12. getGenomeInformation.AffymetrixCdfFile(cdf)
> - getGenomeInformation.AffymetrixCdfFile() is in environment
> 'aroma.affymetrix'
>
> at #11. getGenomeInformation(cdf)
> - getGenomeInformation() is in environment 'aroma.affymetrix'
>
> at #10. getSubsetToAvg.AllelicCrosstalkCalibration(this)
> - getSubsetToAvg.AllelicCrosstalkCalibration() is in environment
> 'aroma.affymetrix'
>
> at #09. getSubsetToAvg(this)
> - getSubsetToAvg() is in environment 'aroma.affymetrix'
>
> at #08. getParameters.AllelicCrosstalkCalibration(this)
> - getParameters.AllelicCrosstalkCalibration() is in environment
> 'aroma.affymetrix'
>
> at #07. getParameters(this)
> - getParameters() is in environment 'R.rsp'
>
> at #06. process.AllelicCrosstalkCalibration(acc, verbose = verbose)
> - process.AllelicCrosstalkCalibration() is in environment
>
>
> Thanks
>
> Nitesh
>
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