Hi
I'm trying to run the command "doCRMAv2", and i get these errors. Let me
know what the problem is, if any of you have encountered this before. I
thought i did not have some library installed but, i have both ACNE and
aroma.affymetrix working properly.
> ds <- doCRMAv2("LeeAV_2012",chipType="GenomeWideSNP_6,Full")
Error in getGenomeInformation.AffymetrixCdfFile(cdf) :
[2012-06-18 16:55:10] Exception: Failed to retrieve genome information for
this chip type: GenomeWideSNP_6
at #12. getGenomeInformation.AffymetrixCdfFile(cdf)
- getGenomeInformation.AffymetrixCdfFile() is in environment
'aroma.affymetrix'
at #11. getGenomeInformation(cdf)
- getGenomeInformation() is in environment 'aroma.affymetrix'
at #10. getSubsetToAvg.AllelicCrosstalkCalibration(this)
- getSubsetToAvg.AllelicCrosstalkCalibration() is in environment
'aroma.affymetrix'
at #09. getSubsetToAvg(this)
- getSubsetToAvg() is in environment 'aroma.affymetrix'
at #08. getParameters.AllelicCrosstalkCalibration(this)
- getParameters.AllelicCrosstalkCalibration() is in environment
'aroma.affymetrix'
at #07. getParameters(this)
- getParameters() is in environment 'R.rsp'
at #06. process.AllelicCrosstalkCalibration(acc, verbose = verbose)
- process.AllelicCrosstalkCalibration() is in environment
Thanks
Nitesh
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